PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_33399_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 188aa MW: 21574.3 Da PI: 7.1441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Neem_33399_f_1 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ d+++++G++ W++Ia++++ gRt++++k++w++ Neem_33399_f_1 68 RGNITPEEQLLIMDLHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 111 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.064 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.39E-30 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.55E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.129 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.57E-12 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDKAPCNSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKAAGLKRT GKSCRLRWLN 60 YLRPDVKRGN ITPEEQLLIM DLHAKWGNRW SKIAKHLPGR TDNEIKNFWR TRIQKHIKQA 120 ETLSGHSSEA NEQASSSQMS TAAYTMEAYS PPSYQANMDH QTFPMAPLPT EVNENYWTME 180 DLWLLNGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 10 | 117 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006470308.1 | 1e-123 | myb-related protein 305 isoform X1 | ||||
Swissprot | P81391 | 3e-95 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A067FJ19 | 1e-121 | A0A067FJ19_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P324 | 1e-121 | A0A2H5P324_CITUN; Uncharacterized protein | ||||
STRING | XP_006470308.1 | 1e-122 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 3e-82 | myb domain protein 21 |
Publications ? help Back to Top | |||
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