PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_33212_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 543aa MW: 61115.4 Da PI: 7.3596

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_33212_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.8e-06	98	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++ G C+ GdrC+F Hgp Neem_33212_f_2 98 RVPCFFYFN-GLCNKGDRCSFLHGP 121 678888888.*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.596	20	46	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.61	22	45	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.54E-6	95	120	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.812	95	122	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-4	96	121	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-5	100	123	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MILFRFQGID CEYRHNDVAR LNPRDCWYWL SGNCINPTCS FRHPPLDGHA TKVPSEFASL 60 PDQSSCCLAQ PLDGHATKVP SEFASLPDQS SVVVNKTRVP CFFYFNGLCN KGDRCSFLHG 120 PNDSAPAGKP SKAAAATNDA LQSENKSSGG NGTGSAPTET HPNPAVITSN QAVDTIVRTK 180 VGILHSSPRS FPQRSASPPV SLSDCEEAAV INSDFMPPLE GLMKSKSHLS TDWSPEEQVD 240 DHIEPEGRRE LSPEFDVLLN NDNMSENLGY EDDPEYLLAI NREHRELNGH LLCYDFEDAI 300 EYEPMYPDDA CNCLDNNQHV LDDFSEHPSN SKGRILDSIL SRKRKLLPMK LAVANRNVDL 360 RDYLRKRRLV DGHLVIHSSR RRQSSRLIGR SQERPQGLVV NQRLHRILAS EFGENYIKSN 420 ENKGTFLKRA NRQGWPRHSK SNMLRQGYKE KRRACKEFDR LVISREPFSG ERTSSQISST 480 FTGPKTLAEI KEGKKKAEEN GDCFGEMRNS TRMSVDFQGP KPLNEILKEK RRLDTVREGD 540 SVS

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MILFRFQGID CEYRHNDVAR LNPRDCWYWL SGNCINPTCS FRHPPLDGHA TKVPSEFASL  60
PDQSSCCLAQ PLDGHATKVP SEFASLPDQS SVVVNKTRVP CFFYFNGLCN KGDRCSFLHG  120
PNDSAPAGKP SKAAAATNDA LQSENKSSGG NGTGSAPTET HPNPAVITSN QAVDTIVRTK  180
VGILHSSPRS FPQRSASPPV SLSDCEEAAV INSDFMPPLE GLMKSKSHLS TDWSPEEQVD  240
DHIEPEGRRE LSPEFDVLLN NDNMSENLGY EDDPEYLLAI NREHRELNGH LLCYDFEDAI  300
EYEPMYPDDA CNCLDNNQHV LDDFSEHPSN SKGRILDSIL SRKRKLLPMK LAVANRNVDL  360
RDYLRKRRLV DGHLVIHSSR RRQSSRLIGR SQERPQGLVV NQRLHRILAS EFGENYIKSN  420
ENKGTFLKRA NRQGWPRHSK SNMLRQGYKE KRRACKEFDR LVISREPFSG ERTSSQISST  480
FTGPKTLAEI KEGKKKAEEN GDCFGEMRNS TRMSVDFQGP KPLNEILKEK RRLDTVREGD  540
SVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475812.1	0.0	zinc finger CCCH domain-containing protein 34-like
Refseq	XP_006475813.1	0.0	zinc finger CCCH domain-containing protein 34-like
TrEMBL	A0A2H5PDZ6	0.0	A0A2H5PDZ6_CITUN; Uncharacterized protein
STRING	XP_006475812.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16432	7	10