PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_33200_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 384aa MW: 42399.8 Da PI: 10.525 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 1.9e-06 | 116 | 136 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G C+ G++CkF+H+ Neem_33200_f_1 116 YCHHYLK-GRCQEGEKCKFSHD 136 5******.*************7 PP | |||||||
2 | zf-CCCH | 21.8 | 3.3e-07 | 170 | 190 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f + G+C++Gd C F+H Neem_33200_f_1 170 PCSNFVAKGFCNRGDDCLFSH 190 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.272 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0034 | 112 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-4 | 116 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-4 | 140 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.723 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.02 | 168 | 192 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 169 | 193 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 170 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 170 | 191 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MAIDADRYNF MPQAGRNKRK ASRDEVNIGS FSVCAENSKV HGEIVEQSAT QKQGITYKEK 60 QQDSGVCNKK KRSAPSKERK AKKKQKERKR RAEKNRQLGV KRLKLRPIVK PKTVTYCHHY 120 LKGRCQEGEK CKFSHDTVPL TKSTPCCHFA RKSCMKGDDC PFDHDLSKYP CSNFVAKGFC 180 NRGDDCLFSH KIPPKKDGSS SSSACLPQLK SPLLLHTLNS LKQPNVDQVS RQNAGVLSNN 240 GDVSSSKNVQ QNVAKPVLKP PALAPKGINC LFVGKSLVVE SSKLKQGSSS PKRNKSGKVA 300 NQTEQNASGT VQNMDETPKQ ILAAPKGVNF LSIGNSSLEN SSGKMVPNFH NQALPACMVR 360 KAMPKLETWQ PTVFQAQLKS QMIC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 90 | KKRSAPSKERKAKKKQKERKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475477.1 | 1e-141 | uncharacterized protein LOC102615714 | ||||
TrEMBL | A0A2H5Q338 | 1e-140 | A0A2H5Q338_CITUN; Uncharacterized protein | ||||
STRING | XP_006475477.1 | 1e-141 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12160 | 15 | 16 |