PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_32902_a_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22602.2 Da PI: 6.6219 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.2 | 2.3e-09 | 43 | 73 | 26 | 54 |
AP2 26 g..krkrfslgkfgtaeeAakaaiaarkkle 54 g ++r++lg+f tae+Aa+a+++a++ + Neem_32902_a_1 43 GvpGKTRIWLGTFETAEDAARAYDEAARLMC 73 444579*********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.826 | 8 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-15 | 31 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-5 | 40 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-12 | 45 | 84 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.60E-19 | 46 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-19 | 46 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MFFSSRHFHK HISDFEIRPK RFDFVPPWLD LSKGIAASVN DTGVPGKTRI WLGTFETAED 60 AARAYDEAAR LMCGPKARTN FPYNPNEPQS SSSKLLSATL AAKLHKCQMA FLQGHKKNNP 120 KEQLQPHTQC TPLAGKSTET SAEWPETKWV GRETQVESXX XXXXXXXSQQ FKSLEDDHIE 180 QMIEELLDYG SIELCCGNST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006427548.1 | 6e-81 | ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 2e-45 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A067E3X8 | 1e-79 | A0A067E3X8_CITSI; Uncharacterized protein | ||||
STRING | XP_006427548.1 | 2e-80 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 1e-24 | ERF family protein |
Publications ? help Back to Top | |||
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