PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_327_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 362aa    MW: 40571 Da    PI: 6.2222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_327_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM453.4e-1448124171
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 
                   lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg
  Neem_327_f_1  48 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTG 124
                   799************.99*********5553344444434666646**********.555666799**********986 PP
2NAM29.32.5e-0912215399128
           NAM  99 lvglkktLvfy..kgrapkgektdWvmheyrl 128
                   ++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Neem_327_f_1 122 TTGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 153
                   68*********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-2743172IPR003441NAC domain
PROSITE profilePS5100512.64748172IPR003441NAC domain
PfamPF023658.5E-1249153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSKSSNLASN ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE AKPDWLGLPA GVKFDPTDQE  60
LIEHLEAKVE AKDMKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGCKKILV LYTNFGKNRK PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW  180
SDRSATTGEG SSDPNSRRDS GSGSCSSKEI IPHRDEVSGA QVAAAISSYG AIDMQQLKSD  240
HFSFVPFRKS FDEVGIGEAS TAREAPVAAG TCEEIRDHQR SHHMAHDHPF HISRPSHPIS  300
TIISPPPLHH TSIILDEDSY HVSRIMLQNE SFQESSMTNP QEAEWLKYSS FWPDPDNQDH  360
HG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475352.10.0NAC domain-containing protein 75
RefseqXP_006475353.10.0NAC domain-containing protein 75
RefseqXP_024953323.10.0NAC domain-containing protein 75
SwissprotQ9M0F81e-138NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A067EL130.0A0A067EL13_CITSI; Uncharacterized protein
STRINGXP_006475352.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-117NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]