PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_32518_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 266aa MW: 30688.8 Da PI: 9.4676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_32518_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	53.9	6.2e-17	5	65	3	62
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFs 62 +GfrFhPt+ee+++++L++k++g ++++ ++++ev+i+k+eP+dLp+ + e++ wyfF Neem_32518_f_2 5 VGFRFHPTEEEIISYFLERKMRGLDFPV-HTVAEVNICKFEPSDLPQlsPLPPEDQVWYFFN 65 7*************************.78**********95334445899***7 PP
2	NAM	64.7	2.8e-20	75	160	32	114
NAM 32 evikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrap 114 ++++ev+i+k+eP+dLp+ + e++ wyfF k+ ++kr++r+t +g+Wk tgkd+ + +k ++e++g k+ Lvfy+ r++ Neem_32518_f_2 75 HTVAEVNICKFEPSDLPQlsPLPPEDQVWYFFNAPVYKNVRSKRTERTTGTGFWKVTGKDRVIWDKqGKEEIGFKRNLVFYSPRSK 160 4599**********95334445899*********************************9967778********76554 PP
3	NAM	59.7	9.8e-19	158	217	70	128
NAM 70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++kr++r+t +g+Wk tg+d+ + +k ++e++g k+ Lvfy+gra +g kt+Wv hey+ Neem_32518_f_2 158 RSKRTERTTGTGFWKVTGNDRVIRDKqGKEEIGFKRNLVFYSGRAANGIKTNWVTHEYHS 217 678*******************9967778*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	25.934	3	231	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-17	4	65	IPR003441	NAC domain
Pfam	PF02365	3.6E-14	5	158	IPR003441	NAC domain
SuperFamily	SSF101941	8.11E-20	69	159	IPR003441	NAC domain
Pfam	PF02365	2.7E-8	154	216	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-19	158	231	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGEFVGFRFH PTEEEIISYF LERKMRGLDF PVHTVAEVNI CKFEPSDLPQ LSPLPPEDQV 60 WYFFNAPVSL DFPVHTVAEV NICKFEPSDL PQLSPLPPED QVWYFFNAPV YKNVRSKRTE 120 RTTGTGFWKV TGKDRVIWDK QGKEEIGFKR NLVFYSPRSK RTERTTGTGF WKVTGNDRVI 180 RDKQGKEEIG FKRNLVFYSG RAANGIKTNW VTHEYHSNRL KEYVLIRLKR KSGDRSGTCN 240 DSNHHLASNT GNNVAVAPQV KEDGLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-16	6	231	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-16	6	231	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-16	6	231	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-16	6	231	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-16	6	231	23	168	NAC domain-containing protein 19
3swm_B	2e-16	6	231	23	168	NAC domain-containing protein 19
3swm_C	2e-16	6	231	23	168	NAC domain-containing protein 19
3swm_D	2e-16	6	231	23	168	NAC domain-containing protein 19
3swp_A	2e-16	6	231	23	168	NAC domain-containing protein 19
3swp_B	2e-16	6	231	23	168	NAC domain-containing protein 19
3swp_C	2e-16	6	231	23	168	NAC domain-containing protein 19
3swp_D	2e-16	6	231	23	168	NAC domain-containing protein 19
4dul_A	2e-16	6	231	20	165	NAC domain-containing protein 19
4dul_B	2e-16	6	231	20	165	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17987	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	5e-20	NAC domain containing protein 69