PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_32412_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family SBP
Protein Properties Length: 166aa    MW: 18868.1 Da    PI: 8.5821
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_32412_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.61.5e-4265142178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +C ve+C adl++a++yh+rhkvCe+hskapvv+v+gl+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk++a
  Neem_32412_f_3  65 CCVVEKCGADLTDARRYHKRHKVCEIHSKAPVVIVAGLRQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKSTA 142
                     6**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3460127IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.50563140IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-3964144IPR004333Transcription factor, SBP-box
PfamPF031102.6E-3266139IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDAASLEAKR LLKEKTIKEC FVEDDMDNEM EEEEEGGGDN YADDEKKKRV SGRRGPGAGG  60
VSTPCCVVEK CGADLTDARR YHKRHKVCEI HSKAPVVIVA GLRQRFCQQC SRFHELSEFD  120
ESKRSCRRRL AGHNERRRKS TAETTGESRQ QLSLQGNSSY RRSQTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-3558139384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451806.15e-67squamosa promoter-binding-like protein 13
RefseqXP_006464784.15e-67squamosa promoter-binding-like protein 13
SwissprotQ387402e-44SBP2_ANTMA; Squamosa promoter-binding protein 2
SwissprotQ387412e-44SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A067FH621e-65A0A067FH62_CITSI; Uncharacterized protein
TrEMBLA0A2H5QHN51e-65A0A2H5QHN5_CITUN; Uncharacterized protein
TrEMBLV4URD21e-65V4URD2_9ROSI; Squamosa promoter-binding protein 1
STRINGXP_006464784.12e-66(Citrus sinensis)
STRINGXP_006451806.12e-66(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.29e-42squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]