PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_32411_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 88aa    MW: 9708.81 Da    PI: 5.6517
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_32411_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.84.8e-113986248
             NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp 48
                    ++G+rF+P+de l ++yL  k++g++  ++++ ikevd+y+++P+dL 
  Neem_32411_f_1 39 AVGIRFNPNDEVLASHYLVGKLSGSTeGPIFSLIKEVDVYQHDPSDLS 86
                    68*********************9997778889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-103487IPR003441NAC domain
PROSITE profilePS5100514.3933888IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASSSSSSKY ANERNAYNLS KISNSLIADD SIKWQEKVAV GIRFNPNDEV LASHYLVGKL  60
SGSTEGPIFS LIKEVDVYQH DPSDLSRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.28e-09NAC domain containing protein 52