PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_323_f_20

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 130aa MW: 14810.3 Da PI: 4.989

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_323_f_20	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.9	7.3e-08	80	102	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f++rtG Ck+G CkF+H+ Neem_323_f_20 80 EDCSFYLRTGCCKFGFYCKFNHP 102 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.07	76	104	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	80	102	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-5	80	103	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MVDVWEKNTT GTWAEESSWS PKRDKTQFSA QEQEQALVDG FRKNVALNEA ENMCKESDNL 60 DGNGESNGTN HEYPLRPYAE DCSFYLRTGC CKFGFYCKFN HPVRRGFQGV KEMEGGGIVE 120 HQQGQIQCKV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447207.2	8e-42	zinc finger CCCH domain-containing protein 43
Refseq	XP_006469940.1	8e-42	zinc finger CCCH domain-containing protein 43-like
Refseq	XP_024045834.1	8e-42	zinc finger CCCH domain-containing protein 43
Refseq	XP_024045835.1	8e-42	zinc finger CCCH domain-containing protein 43
TrEMBL	A0A067DSB2	2e-40	A0A067DSB2_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QKS6	4e-40	A0A2H5QKS6_CITUN; Uncharacterized protein
TrEMBL	A0A2H5QKV5	1e-40	A0A2H5QKV5_CITUN; Uncharacterized protein
STRING	XP_006469940.1	3e-41	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22971	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-15	C3H family protein