PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_323_f_19
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 218aa    MW: 24450.5 Da    PI: 7.6869
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_323_f_19genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.4e-091738526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   +C++++  G CkyG++C+++H+
  Neem_323_f_19 17 ECKYHLSAGGCKYGATCRYNHS 38
                   7********************8 PP
2zf-CCCH361.2e-117092426
                   ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                   + C+f++rtG C yG +C+++H+
  Neem_323_f_19 70 KDCPFYMRTGSCAYGVNCRYHHP 92
                   58********************9 PP
3zf-CCCH33.29e-11181207127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++f++tG C y + CkF+H++
  Neem_323_f_19 181 PGEPPCDYFMKTGKCEYRSACKFHHPK 207
                    5899*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00711239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8961240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-51641IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-71738IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-41840IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9766694IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-66893IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-66993IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-97092IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-47291IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-5180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033180208IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-7182207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6184208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4185206IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKESKSESLL EKTGVIECKY HLSAGGCKYG ATCRYNHSTE KEKTLRYIKK SEKAPLELNF  60
LGLPIRVLEK DCPFYMRTGS CAYGVNCRYH HPDPVAAGES DHFNANPTEV FLAGHSSGNN  120
DRLQFKEASE PDVESWSSNT GSIFPPARTE MPLPSPAIND KMKTADTSTY LQQFKEFPER  180
PGEPPCDYFM KTGKCEYRSA CKFHHPKSRA SESSVCAQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447207.21e-79zinc finger CCCH domain-containing protein 43
RefseqXP_006469940.11e-79zinc finger CCCH domain-containing protein 43-like
RefseqXP_024045834.11e-79zinc finger CCCH domain-containing protein 43
RefseqXP_024045835.11e-79zinc finger CCCH domain-containing protein 43
TrEMBLV4U3F83e-80V4U3F8_9ROSI; Uncharacterized protein
STRINGXP_006447207.15e-81(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.16e-43C3H family protein