PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3235_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 1114aa    MW: 124850 Da    PI: 8.1852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3235_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.8e-09444488246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT eEd+ l+  +++ G ++W  Ia  +g++Rt+ qc  r+q 
    Neem_3235_f_2 444 NPWTVEEDKNLLLIIQEKGINDWFDIAVSLGTNRTPFQCLARYQR 488
                      69*****************************************96 PP
2Myb_DNA-binding431e-13497542248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT+eEd++l  av+ +G  +W  +a+t+  gRt+ qc +rw+k l
    Neem_3235_f_2 497 REWTEEEDDQLRIAVEAFGDSNWQFVASTLK-GRTGTQCSNRWNKTL 542
                      68****************************9.************975 PP
3Myb_DNA-binding47.25e-15550593246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      grWT++Ed+ l  a  ++G+++Wk+Ia+ ++ gRt  qc++rw +
    Neem_3235_f_2 550 GRWTPDEDKYLTVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVN 593
                      8******************************.***********87 PP
4Myb_DNA-binding41.72.7e-13601643145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT +Ed++l  a++++G   W+++a+ ++  Rt++qc  rw 
    Neem_3235_f_2 601 RSKWTVQEDLRLEAAIEEHGYC-WSKVAAALP-SRTDNQCWRRWK 643
                      789*****************99.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.552338437IPR017877Myb-like domain
SMARTSM007171.9342439IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-9345361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-9410444IPR009057Homeodomain-like
SuperFamilySSF466894.21E-17419490IPR009057Homeodomain-like
PROSITE profilePS500909.245438490IPR017877Myb-like domain
SMARTSM007174.2E-9442492IPR001005SANT/Myb domain
CDDcd001672.45E-7445490No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10445491IPR009057Homeodomain-like
PfamPF139214.2E-8446492No hitNo description
SuperFamilySSF466892.21E-19475546IPR009057Homeodomain-like
PROSITE profilePS5129418.634491546IPR017930Myb domain
SMARTSM007171.1E-11495544IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-16496544IPR009057Homeodomain-like
PfamPF002499.1E-12497541IPR001005SANT/Myb domain
CDDcd001675.56E-10498542No hitNo description
SuperFamilySSF466897.95E-26546642IPR009057Homeodomain-like
PROSITE profilePS5129411.194547595IPR017930Myb domain
SMARTSM007174.0E-14548597IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-21550601IPR009057Homeodomain-like
PfamPF002491.7E-13550593IPR001005SANT/Myb domain
CDDcd001676.21E-12551595No hitNo description
PROSITE profilePS5129422.69596650IPR017930Myb domain
SMARTSM007171.3E-11600648IPR001005SANT/Myb domain
PfamPF002498.4E-12601643IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-17602645IPR009057Homeodomain-like
CDDcd001671.08E-9603645No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MIVGADPNDL GNSDRHSPIA PSSPCGNAGA WSSDGEDDLA LVRNIQNRLA LSDDVCQPLS  60
LEALCTLPPP VTSDDEEDDF ETLRVIQQRF SAYNSTGNIV PFMLVYNNFN ADTTKSGVED  120
FSQTQQQVHA SSVASENTTS NNSCLNILNV NAGEGLKKSK ETCKNVDLLR DKVTTEPCAS  180
AELPCQSDVS RLSIVPQKPS FPKSAQMFID AIKKNRACQK FIRSKLTQIE SRIEENKKLR  240
ERVKILKDFQ VSCRKITGRA LSQKKDPRVQ LISAQKSRNS KDSEGFHFNC CSLVEVYSGF  300
QTGFLDILVT DKKPSAMNYG PAENSHVANY RMALEKFPLS LQRKKWSKTE SENLGKGIRQ  360
QFQEMVLQLS VDRLSVAEGS SANTNGLDNI FASIKDLDVT PEMIREFLPK VIWNQLASMY  420
VEGRSGAECE ARWLNHEDPL INHNPWTVEE DKNLLLIIQE KGINDWFDIA VSLGTNRTPF  480
QCLARYQRSL NACMLKREWT EEEDDQLRIA VEAFGDSNWQ FVASTLKGRT GTQCSNRWNK  540
TLHPMRQKVG RWTPDEDKYL TVATMLFGPR NWKKIAQFVP GRTQVQCRER WVNSLDPSVN  600
RSKWTVQEDL RLEAAIEEHG YCWSKVAAAL PSRTDNQCWR RWKALHPHEV PLRQAARKMQ  660
KAALICNFVD REQERPALGP NDFIPLVTIN LAPQLENVNS SKKRKRKSSR ELKSGKEKDA  720
CNVRKKVQSE RAVEDPQVCS DEVLRMTNSD EIETCDKDDA TLKKKTVKPH SGKKKVNSRP  780
DSAKKSLKRG SEKQYCAELD ECNQGNLLQN PENSTSNGEG ENFSLVGINK AQKQYHKMKI  840
CNETSEECHG VTCTSCQQDS CNMSKSRSKS CSKDLLQASD GDDITLACFL RNKSKKRKLG  900
TKTAKRACSP SRKKNMGSPS LSQAVDQHEN QIQMPSQMQN GEAHTSCNGV TPEYTSLCGM  960
QSSHLKDMQT MGANDKKCAA ESIIEGGFIT YREPVLEPAT NVNVKDDLEV GDATLACLQN  1020
RLLPNMPSSH SKDMQKVVAS DKEHGRGDLV NSGTITLQEP VREQISNKTE GDVDAADITL  1080
ACWRNKVKKC NKLEGDVDAA DITLACLHNK LKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-294136366159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-294136366159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1701706KKRKRK
2889897LRNKSKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033739.10.0myb-like protein L isoform X1
TrEMBLA0A067F9Q70.0A0A067F9Q7_CITSI; Uncharacterized protein
STRINGXP_006490738.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1