PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_32320_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 249aa MW: 28529.3 Da PI: 8.7833

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_32320_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.9	5.3e-14	154	197	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ +Le +v L + N++L+ke Neem_32320_f_1 154 RRQKRMIKNRESAARSRARKQAYTNHLESRVLCLRQTNSSLRKE 197 69****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-10	150	207	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.289	152	197	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.0E-11	154	203	No hit	No description
Pfam	PF00170	2.4E-12	154	197	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-14	154	199	No hit	No description
CDD	cd14707	1.17E-17	154	200	No hit	No description
PROSITE pattern	PS00036	0	157	172	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MVPANRAQGS LFQPLARQGS VYNPSSFDEV QSQMGKPMNL NEFVKNVVSG SPEDVWKEIV 60 HHEHVNEVDN QSVQQQLTLG ETTLEDFLLR AGVINIGNVY NENPVAEIGY SENQLGFTMP 120 VPAVPATPSS DSKVVNNERK RRYSDEIMEK TIERRQKRMI KNRESAARSR ARKQAYTNHL 180 ESRVLCLRQT NSSLRKEKGC CLEVNLTVFR KHETEMLMLL FQQEMEMVWS SYGNGVQMSK 240 YQLRRTSSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887632.2	2e-58	ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2N9FXK0	2e-59	A0A2N9FXK0_FAGSY; Uncharacterized protein
STRING	XP_006473016.1	4e-63	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17216	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	2e-31	bZIP family protein