PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_32037_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | FAR1 | ||||||||
Protein Properties | Length: 215aa MW: 24239.7 Da PI: 5.8226 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.5 | 8.5e-27 | 93 | 181 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YAk+vGF +r+ + ++s r+g i++r+f C+keg+ ++kk+ + + r++r+ tr gCka+++v+kek+gkw+vtkle+ H+H+l Neem_32037_f_1 93 YYDAYAKRVGFVIRVGNCHRSCRDGLIVSRRFLCNKEGFCVNNKKTkRLEVRKRREITREGCKAMIMVRKEKSGKWVVTKLETAHSHPL 181 8**************************************98888873567788999*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-26 | 93 | 181 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEYDQLSICV VVNFTASVNG DFGLISDSAE IEPEADIDNK MIEIMAGKDI CMTEGGELID 60 FYDGRELIVN EVDGNAEPYI GMEFESEETA MVYYDAYAKR VGFVIRVGNC HRSCRDGLIV 120 SRRFLCNKEG FCVNNKKTKR LEVRKRREIT REGCKAMIMV RKEKSGKWVV TKLETAHSHP 180 LGIPAGKGRR VTVQARPQVS STFYLFLEGQ NLSDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028119173.1 | 7e-96 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Swissprot | Q9SZL8 | 7e-25 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2R6QJP0 | 7e-98 | A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment) | ||||
STRING | XP_010268168.1 | 6e-87 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25913 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-38 | FAR1 family protein |
Publications ? help Back to Top | |||
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