PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3183_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 584aa MW: 64845.3 Da PI: 8.3518 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.3e-11 | 152 | 176 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ Neem_3183_f_1 152 GEKDCAHYMQTRTCKFGDSCKFDHP 176 7889********************9 PP | |||||||
2 | zf-CCCH | 33.9 | 5.3e-11 | 202 | 228 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G +CkF+H++ Neem_3183_f_1 202 PGEPDCPYFLKTKKCKFGLKCKFNHPK 228 5789*********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.4e-12 | 251 | 275 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++G+Ck+G++CkF+H++ Neem_3183_f_1 251 EPPCAFYLKNGICKFGATCKFHHPK 275 79*********************96 PP | |||||||
4 | zf-CCCH | 38.1 | 2.5e-12 | 329 | 354 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Neem_3183_f_1 329 PGEVDCPFYLKTGSCKYGSTCRYNHP 354 57899********************9 PP | |||||||
5 | zf-CCCH | 41 | 3.3e-13 | 417 | 438 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG CkyG+rCkF+H+ Neem_3183_f_1 417 ECDYYMKTGVCKYGERCKFHHP 438 7********************9 PP | |||||||
6 | zf-CCCH | 34.9 | 2.6e-11 | 538 | 558 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++tG CkyG++CkF H+ Neem_3183_f_1 538 CPYYMKTGSCKYGSTCKFDHP 558 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.779 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-4 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 151 | 177 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 156 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.737 | 201 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 201 | 228 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 203 | 228 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-5 | 206 | 231 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 207 | 228 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 248 | 275 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.572 | 248 | 276 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 251 | 275 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 251 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 253 | 274 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-7 | 328 | 355 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 328 | 356 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 330 | 354 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 332 | 355 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 334 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-7 | 412 | 439 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 412 | 440 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-7 | 413 | 440 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 417 | 438 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-6 | 418 | 438 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 535 | 559 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-6 | 536 | 559 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 537 | 560 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-9 | 538 | 558 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-5 | 538 | 557 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MAKQLYGYSS TYGASGAGGG SGTPTSSATA ALSSVYTSRS LADPHHLSDS ALRYDPDHSK 60 YSSSSIYDTL RYSGTATSPY LSSQQPWPPG VDPTDHLTAG IKRHSEALYH PTVLGTHATI 120 GQSEAWYSTN SLAKRPRFES ASYFHLYPQR PGEKDCAHYM QTRTCKFGDS CKFDHPLWVP 180 EGGIPDWKEV PLIASEWLPE RPGEPDCPYF LKTKKCKFGL KCKFNHPKDK LIALSDSGNA 240 DVSTLPERPS EPPCAFYLKN GICKFGATCK FHHPKDIQIS SGGQENGSSK QNELLFKTEE 300 TTGLLNSVMP HVPYIPAMLH NSKGLPIRPG EVDCPFYLKT GSCKYGSTCR YNHPDRNAIN 360 PPASAIGHHF ITSHAASLSL GIVNPAASMY QTIDPRLAQS ALGVSPTFYP QRPGQMECDY 420 YMKTGVCKYG ERCKFHHPLD LSTAKQASQE TVKLTLAGLP RRELCMNSFY VHLSYFHKEV 480 KNSTQMNSHL GIFRFRHLVS RLYVIYICVL IYMGGTWEWK HRRYFLSLTL HVEGALHCPY 540 YMKTGSCKYG STCKFDHPTP GEVLAKTGSQ GTSTEGDEKE AETD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422325.2 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Refseq | XP_006493722.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-167 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A067F2C4 | 0.0 | A0A067F2C4_CITSI; Uncharacterized protein | ||||
STRING | XP_006493722.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9761 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-157 | floral homeotic protein (HUA1) |