PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_31505_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GeBP | ||||||||
Protein Properties | Length: 411aa MW: 45797.1 Da PI: 5.2853 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 129.2 | 1.6e-40 | 181 | 278 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 lfqrlwseeDeiv+L+G+i++ +k+g +p +d++afy+++kks++++vs+ qlv+KirrLK+K++++ +k k+g++++fsk+h+qk+++lskk+ Neem_31505_f_3 181 LFQRLWSEEDEIVVLKGMIEYSTKKGIDPNQDMNAFYDYIKKSLHVDVSRAQLVDKIRRLKRKYENNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 275 79********************************************************************99*********************** PP DUF573 96 Wgs 98 Wg+ Neem_31505_f_3 276 WGT 278 *95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-35 | 182 | 277 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MAPKKANPIE EPPAASLSEG EEEETSSEEE TSSEDEAEED TQEPSQPSSP PRQQTQKQTA 60 VKKPEITTVT SASPPRQQTQ KQTAVKKPEI TTVTSQSKSS SSEVSGSESE SESEPDATPK 120 PIASKPMEET PKATKSRSKP AAKRPNETEE TPKDSKRLKK KGGDADLDEE KKPGEDTKKQ 180 LFQRLWSEED EIVVLKGMIE YSTKKGIDPN QDMNAFYDYI KKSLHVDVSR AQLVDKIRRL 240 KRKYENNLEK GLKKGEDQTF SKPHEQKAYD LSKKLWGTES ISGVIESAAK SNGKVRKNQN 300 QKGNIKSLAF LKAELIDGAK DVEKMDVDNK EGDGVDKSVN MKEFHKNFGM AGLEEFVIND 360 GLDMIGAVKK AELEEKWKKL QIAQLELFLQ RNELINDQAK LTLDALKSSG N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449140.1 | 1e-175 | probable transcription factor At1g11510 | ||||
TrEMBL | V4UDY2 | 1e-174 | V4UDY2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449140.1 | 1e-175 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 3e-33 | DNA-binding storekeeper protein-related transcriptional regulator |