PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_31326_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 380aa MW: 42029.9 Da PI: 5.8376 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 202 | 256 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Neem_31326_f_1 202 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 256 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128 | 4.1e-41 | 202 | 292 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Neem_31326_f_1 202 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 292 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-17 | 185 | 259 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.02E-18 | 196 | 259 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 198 | 258 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-15 | 200 | 262 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.46E-16 | 202 | 259 | No hit | No description |
Pfam | PF00046 | 5.1E-15 | 202 | 256 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 233 | 256 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00373 | 249 | 290 | No hit | No description |
Pfam | PF02183 | 5.9E-11 | 258 | 292 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.1E-26 | 258 | 301 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MELGLSLGDT PKPFGFMEKS HEVSSNKGLG FCMGLSIGQS VAEELDLLPN TPVPRNQLAS 60 FLPFPWTSDN ANTDEANKTS VVDCEKRSSS VDPPIQLDLL PNAPVPRNQL ASFLPFPWTS 120 DNGQMVRGFD VNKFPLAEEP EDGAALSSSP NNSAASSFQM DFCIYSSGGN KKDIESGGMG 180 NEIEAERASS RVSDEDENGC TRKKLRLSKE QSAFLEESFK EHNTLNPKQK LALAKQLNLR 240 PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LHKELQELRA LKTSNPFYMQ 300 LPATTLTMCP SCERVATTTN SNACGSGAAT TTTNISDPTS TTTGFSLSRP RFFPFSQNQN 360 QQTTSSSSRD QIGKHVEKSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 206 | TRKKLRL |
2 | 250 | 258 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464094.1 | 1e-147 | homeobox-leucine zipper protein HOX11 isoform X2 | ||||
Swissprot | P46665 | 1e-95 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A3N7FIE7 | 1e-146 | A0A3N7FIE7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s02850.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-78 | homeobox from Arabidopsis thaliana |