PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31287_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARR-B
Protein Properties Length: 317aa    MW: 35747 Da    PI: 10.4317
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31287_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.35.5e-26195248155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH+rF++a++++ G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Neem_31287_f_1 195 KAKVVWTNSLHNRFLQAIKHI-GLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 248
                     6799*****************.********************************6 PP
2Response_reg623.1e-2128428109
                     EESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  28 eaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     +++++ +al+++  k++++Dl+l+D+ mp+m+G+el k+i+ee  +lp++++++ + e+++l+ l  G+  ++ Kp++pe+l +
  Neem_31287_f_1   2 TVKSPLDALATIriKQEQIDLVLTDLHMPRMNGIELQKQINEEF-HLPVVIMSSDDRESMILKSLASGVVFYILKPINPEDLKN 84 
                     577888899988667888************************99.************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004480.007186IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.965190IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.57E-21290No hitNo description
Gene3DG3DSA:3.40.50.23006.8E-25297No hitNo description
SuperFamilySSF521721.31E-22391IPR011006CheY-like superfamily
PfamPF000722.7E-17484IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466898.6E-20192252IPR009057Homeodomain-like
PROSITE profilePS5129412.043192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-26193252IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26195248IPR006447Myb domain, plants
PfamPF002491.8E-6198247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTVKSPLDAL ATIRIKQEQI DLVLTDLHMP RMNGIELQKQ INEEFHLPVV IMSSDDRESM  60
ILKSLASGVV FYILKPINPE DLKNVWQYAI GSKKGKSILI EELASVEGGF SVESSTEKIS  120
YGNIGSASSV NEDKHHKKDS KRKSSKKGTE KISYGNIGSA SSVNEDKHHK KDSKRKSSKK  180
EKEDQDGENP VAPKKAKVVW TNSLHNRFLQ AIKHIGLEKA VPKKILEFMN VPGLTRENVA  240
SHLQKYRIFL KRVAEKGAHA LSRNFSERAL RSTFASGHSS LTLRNAQDYA LIRARQQMRP  300
FQARYEGTML LKPHSFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-23192254264ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044401.11e-110uncharacterized protein LOC18033187
TrEMBLA0A2H5NM251e-110A0A2H5NM25_CITUN; Uncharacterized protein
STRINGXP_006490467.11e-108(Citrus sinensis)
STRINGXP_006421850.11e-109(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.12e-56response regulator 21