PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_31286_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | TALE | ||||||||
Protein Properties | Length: 503aa MW: 57359.7 Da PI: 9.4238 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.6 | 1.4e-10 | 325 | 360 | 21 | 54 |
H..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 k..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 + ++yp+ ++++ LA+k+gL+++qV++WF N R + Neem_31286_f_1 325 NflHPYPTDSDKQMLAQKTGLSKNQVSNWFINARVR 360 44489*****************************87 PP | |||||||
2 | BELL | 72.8 | 5.5e-24 | 213 | 266 | 19 | 72 |
BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 V+++Yk y++q+q vi sFe+vaglg+a+p+ s+A kaiS+hF cLk+ai +qi Neem_31286_f_1 213 VYRKYKVYYQQMQSVITSFETVAGLGHAAPHLSFAFKAISKHFCCLKNAILDQI 266 99**************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.8E-25 | 130 | 264 | IPR006563 | POX domain |
Pfam | PF07526 | 5.4E-29 | 135 | 262 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 13.005 | 301 | 364 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-12 | 304 | 368 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.86E-12 | 304 | 365 | No hit | No description |
SuperFamily | SSF46689 | 3.12E-17 | 305 | 371 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-26 | 307 | 368 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-18 | 321 | 360 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 339 | 362 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MAENPEPRHL PQQNRRNKLR VTTDQTNQEQ TSSYMFHTTL PSLFQLNSST IWPSSSSSLQ 60 ILYPSSVQDV RDHVNYQQPF YSHQRLSLSL PCHHFPLNLN AQQYNVVSVS GDSLKQKGEV 120 RNSVPLGPFT GYASILMRSR FLKPAQQILD EFCGTVYFDP SRSQVDSFSE TPIRDFVSFS 180 DRIERSWKNS NLVLMLEEKS VSRGKISDCP LPVYRKYKVY YQQMQSVITS FETVAGLGHA 240 APHLSFAFKA ISKHFCCLKN AILDQIHDSG KTVSNNIAGK DTAEQAFYSQ KPVQKLGFLR 300 PPHWRSQRAL PDHAVGLLKR WLYENFLHPY PTDSDKQMLA QKTGLSKNQV SNWFINARVR 360 LWRPMVEEIH MLEVGQTRAP AAAVYPDINM PSDHQNTISA EKLPQTTERQ QAERIPNKRH 420 RNKPSQTSKQ NQKQKNASFS NLLSEQHIGV GGNNDVSLAL ALNQNNGNEL SRPFTVSVPR 480 HFDLEMEAEV DMETGPEVQI QHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-13 | 310 | 368 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-13 | 310 | 368 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-13 | 306 | 368 | 1 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-13 | 306 | 368 | 1 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042204.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A2H5PIW4 | 0.0 | A0A2H5PIW4_CITUN; Uncharacterized protein | ||||
STRING | XP_006486540.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17615 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-69 | TALE family protein |