PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_31107_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARR-B | ||||||||
Protein Properties | Length: 254aa MW: 28314.6 Da PI: 5.9731 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 61.1 | 2.2e-19 | 197 | 246 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kp+l Wt+eLH+rF++a+ L G++ A Pk+il+ m+v+gL e++ SHLQ Neem_31107_f_2 197 KPKLIWTHELHNRFLQAIGVL-GIDGAHPKKILQYMNVPGLKKENISSHLQ 246 79*******************.***************************** PP | |||||||
2 | Response_reg | 49 | 3.3e-17 | 24 | 132 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vd + + + +l ++l gy +v++a+ +++al +++e++ +l+l +p+md +ell++ e + klpi++++a ++e+d+l l G Neem_31107_f_2 24 VLLVDGDSTCLAILSKMLHWFGY-KVNTAKRATDALCIIQEREgeLNLLLAEAHLPDMDKYELLETVGETS-KLPIVIMSADDNENDMLGGLFKG 116 89*********************.***************999989**********************8877.9********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +l+Kp +++++ + Neem_31107_f_2 117 AAFYLVKPLSMNDIKN 132 **********999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.3E-25 | 21 | 169 | No hit | No description |
SMART | SM00448 | 5.0E-13 | 22 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 2.56E-22 | 22 | 138 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 28.51 | 23 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.2E-13 | 24 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.56E-14 | 25 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 195 | 246 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-13 | 195 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-17 | 197 | 247 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSSKKAISVE SGGNALLLPM SVSVLLVDGD STCLAILSKM LHWFGYKVNT AKRATDALCI 60 IQEREGELNL LLAEAHLPDM DKYELLETVG ETSKLPIVIM SADDNENDML GGLFKGAAFY 120 LVKPLSMNDI KNLWQFAFIK KTDAMTDAMV TAERLSSLSS DDTDDQMLPN KGKDAKRKKE 180 MDKNQKEDND DYSVQKKPKL IWTHELHNRF LQAIGVLGID GAHPKKILQY MNVPGLKKEN 240 ISSHLQVCTP ETDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-16 | 193 | 246 | 1 | 54 | ARR10-B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445166.2 | 1e-115 | two-component response regulator ARR2 isoform X1 | ||||
Refseq | XP_006491000.1 | 1e-115 | two-component response regulator ARR2 isoform X1 | ||||
Refseq | XP_024044066.1 | 1e-115 | two-component response regulator ARR2 isoform X2 | ||||
TrEMBL | A0A2H5NPH3 | 1e-113 | A0A2H5NPH3_CITUN; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4U880 | 1e-114 | V4U880_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491000.1 | 1e-114 | (Citrus sinensis) | ||||
STRING | XP_006445166.1 | 1e-114 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17210 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-48 | response regulator 2 |