PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31069_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 299aa    MW: 34802 Da    PI: 8.2041
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31069_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.9e-50141421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     + pGfrFhPtdeelv +yL++kve+k++++ e+ik++diyk++PwdLpk  + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s 
  Neem_31069_f_2  14 MLPGFRFHPTDEELVGFYLRRKVEKKPISI-EIIKQTDIYKYDPWDLPKVSTVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIHSV 107
                     579***************************.89***************8777899**************************************97 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Neem_31069_f_2 108 kePHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 142
                     434445***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5512171IPR003441NAC domain
PROSITE profilePS5100553.62514172IPR003441NAC domain
PfamPF023652.6E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEVAKMNKDE EEDMLPGFRF HPTDEELVGF YLRRKVEKKP ISIEIIKQTD IYKYDPWDLP  60
KVSTVGEKEW YFFCIRGRKY RNSIRPNRVT GSGFWKATGI DKPIHSVKEP HDCIGLKKSL  120
VYYRGSAGKG TKTDWMMHEF RLPPNGKSSS LSNTKDIAQE AEVWTLCRIF KRTPTYKKYT  180
PNWKEAPATK RNHNDSSSKT CSSSLESENS SEQYMGFVDS FHHQQNESKS FIINHVEERN  240
HLFMSQFNPL VQSPYSASYS SFWNSNGDDF FTNGNWDELR SVVELAADLP QAHNVYDCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4811784171NO APICAL MERISTEM PROTEIN
1ut4_B1e-4811784171NO APICAL MERISTEM PROTEIN
1ut7_A1e-4811784171NO APICAL MERISTEM PROTEIN
1ut7_B1e-4811784171NO APICAL MERISTEM PROTEIN
3swm_A1e-4811787174NAC domain-containing protein 19
3swm_B1e-4811787174NAC domain-containing protein 19
3swm_C1e-4811787174NAC domain-containing protein 19
3swm_D1e-4811787174NAC domain-containing protein 19
3swp_A1e-4811787174NAC domain-containing protein 19
3swp_B1e-4811787174NAC domain-containing protein 19
3swp_C1e-4811787174NAC domain-containing protein 19
3swp_D1e-4811787174NAC domain-containing protein 19
4dul_A1e-4811784171NAC domain-containing protein 19
4dul_B1e-4811784171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437126.11e-161transcription factor JUNGBRUNNEN 1 isoform X1
RefseqXP_006484909.11e-161transcription factor JUNGBRUNNEN 1 isoform X1
SwissprotQ9SK557e-98NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A067E9W21e-160A0A067E9W2_CITSI; Uncharacterized protein
TrEMBLA0A2H5QU551e-160A0A2H5QU55_CITUN; Uncharacterized protein
TrEMBLV4TKN81e-160V4TKN8_9ROSI; Uncharacterized protein
STRINGXP_006484909.11e-160(Citrus sinensis)
STRINGXP_006437126.11e-160(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-95NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]