PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_31069_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 34802 Da PI: 8.2041 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.9e-50 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yL++kve+k++++ e+ik++diyk++PwdLpk + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s Neem_31069_f_2 14 MLPGFRFHPTDEELVGFYLRRKVEKKPISI-EIIKQTDIYKYDPWDLPKVSTVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIHSV 107 579***************************.89***************8777899**************************************97 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lv+y+g+a kg+ktdW+mhe+rl Neem_31069_f_2 108 kePHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 142 434445***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-55 | 12 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.625 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-25 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEVAKMNKDE EEDMLPGFRF HPTDEELVGF YLRRKVEKKP ISIEIIKQTD IYKYDPWDLP 60 KVSTVGEKEW YFFCIRGRKY RNSIRPNRVT GSGFWKATGI DKPIHSVKEP HDCIGLKKSL 120 VYYRGSAGKG TKTDWMMHEF RLPPNGKSSS LSNTKDIAQE AEVWTLCRIF KRTPTYKKYT 180 PNWKEAPATK RNHNDSSSKT CSSSLESENS SEQYMGFVDS FHHQQNESKS FIINHVEERN 240 HLFMSQFNPL VQSPYSASYS SFWNSNGDDF FTNGNWDELR SVVELAADLP QAHNVYDCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 1 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 1 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 1 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 1 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 1 | 178 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 1 | 178 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437126.1 | 1e-161 | transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
Refseq | XP_006484909.1 | 1e-161 | transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
Swissprot | Q9SK55 | 7e-98 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A067E9W2 | 1e-160 | A0A067E9W2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QU55 | 1e-160 | A0A2H5QU55_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TKN8 | 1e-160 | V4TKN8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006484909.1 | 1e-160 | (Citrus sinensis) | ||||
STRING | XP_006437126.1 | 1e-160 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 5e-95 | NAC domain containing protein 42 |