PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_31049_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 549aa MW: 60659.7 Da PI: 7.4597 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.5 | 3.6e-25 | 143 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+ltpsd++++g +++pk++a+e+ ++++ ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv +++L +gD ++F + ++ Neem_31049_f_1 143 FSKKLTPSDTSTHGGFSVPKRHADEClppldmAQDPPL-QELVANDLHGMEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDACIFL--RGEN 234 88*****************************8444444.59************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ Neem_31049_f_1 235 GELRVGVHRA 244 99****9986 PP | |||||||
2 | Auxin_resp | 107.1 | 1.9e-35 | 269 | 351 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha+st+++F+v+Y+P++s++eF+v++++++++ ++ +svG+Rfkmafe+e++ e+r++Gtvvg++++d +rWp S+Wr+Lk Neem_31049_f_1 269 AFHAISTGTMFTVYYRPWTSPAEFIVPFNQYMRSAEIDYSVGTRFKMAFEGEECGEQRVAGTVVGIEAIDHIRWPASEWRCLK 351 689******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-36 | 134 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-40 | 134 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.18E-23 | 141 | 243 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-23 | 143 | 244 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-23 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.6E-33 | 269 | 351 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MGGVGGEGKE SSTGVSQSRK RMGDALSTKH NQGGKDELYT ELWRACAGPL VYVPRAGDIV 60 YYFLQGHMEQ VEAYTSEDGK MEMPIYNLPP KILCEVVYVQ LKAEAGTDEV FAQITLLPKP 120 KDEPSLEDGD SLPSPPKANV WSFSKKLTPS DTSTHGGFSV PKRHADECLP PLDMAQDPPL 180 QELVANDLHG MEWRFRHIYR GQPKRHLLTS GWSVFVTSKK LVAGDACIFL RGENGELRVG 240 VHRAIKQQNN GSTSVISGHS MQHGILASAF HAISTGTMFT VYYRPWTSPA EFIVPFNQYM 300 RSAEIDYSVG TRFKMAFEGE ECGEQRVAGT VVGIEAIDHI RWPASEWRCL KVRWDAASDT 360 LMRPTRVSPW NIEQIVCNNK KPAPGQNRQK RQRSIDVSSP GFSSLLNNGV LQGQEDPENK 420 AVGIKELGAP KPPLLPYLVS HPNPDWGYMQ IRLENKLHLP IRDKLYLHPN STVSLSGGSI 480 VSSSFPNHWP AAFAPYGVHD NAALSRNFSV PNASSLSSGS QEWRTLELKD ENAMPALSVL 540 GLKSGGPWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-143 | 36 | 373 | 17 | 353 | Auxin response factor 1 |
4ldw_A | 1e-143 | 36 | 373 | 17 | 353 | Auxin response factor 1 |
4ldw_B | 1e-143 | 36 | 373 | 17 | 353 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045602.1 | 0.0 | auxin response factor 2B | ||||
Refseq | XP_024954836.1 | 0.0 | auxin response factor 2B-like isoform X3 | ||||
Swissprot | Q94JM3 | 1e-166 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A067H8T0 | 0.0 | A0A067H8T0_CITSI; Auxin response factor | ||||
STRING | XP_006479861.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15797 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-168 | auxin response factor 2 |