PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3103_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 455aa    MW: 51042.5 Da    PI: 6.9689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3103_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-16133178147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia++++ gR++k+c++rw++ 
    Neem_3103_f_6 133 RGHWRPAEDSKLRELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 178
                      899*****************************.***********996 PP
2Myb_DNA-binding52.98.7e-17186228246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
    Neem_3103_f_6 186 RAFSEEEEERLMAAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 228
                      689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.837128179IPR017930Myb domain
SMARTSM007173.0E-14132181IPR001005SANT/Myb domain
SuperFamilySSF466891.8E-27133226IPR009057Homeodomain-like
PfamPF002493.1E-16133178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-26134186IPR009057Homeodomain-like
CDDcd001674.01E-13136177No hitNo description
PROSITE profilePS5129426.559180234IPR017930Myb domain
SMARTSM007171.2E-13184232IPR001005SANT/Myb domain
PfamPF002492.8E-13186227IPR001005SANT/Myb domain
CDDcd001676.31E-11187227No hitNo description
Gene3DG3DSA:1.10.10.602.2E-20187233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MTLQQFHDSS FCQQENESMT TNHYAFYANA SSHSNSSMEN MFSHMGSSLY VCPINYVVTS  60
QNISCSLEDN YNSEVVATAA AAAGDGNEEN SGVDVVAVED VARKRINISE ENPDENSAFV  120
KEMNCVQTKV CSRGHWRPAE DSKLRELVAL YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD  180
PRINKRAFSE EEEERLMAAH RVYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREQSSA  240
YRRRKLNQVV DRKLDEESKG FLRTNVKASY NREVNYSNCL NICNVSFINS SSQSPFTAPN  300
GRSNGTFNMT RSEQAVMING RDFFLGSTSS SSSNSFLPPS RYHGNHKTTF DFFSGCKADD  360
SLGRNSITHC DMMMKNDTNF TVSNPYSHQM IMQQSICSNY NFSTAFSDTV ASASQVSITE  420
LPSPSSQSVA ENNTATSHLD NNISPPFIDF LGVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-341332337107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955401.11e-137transcription factor MYB35
TrEMBLA0A061FAA01e-123A0A061FAA0_THECC; Myb domain protein 105, putative
STRINGEOY142551e-124(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-76myb domain protein 105