PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31015_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TCP
Protein Properties Length: 390aa    MW: 43439.6 Da    PI: 8.6483
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31015_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.31.2e-29502073128
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.....sec..eaesssssasnsssg.. 88 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl   k  i++l+ ++ ++      +       s++s+as+ss +  
  Neem_31015_f_1  50 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTKSDIDKLPPLQIPQGfgqfhQ-QilL--SHESNASQSSLSpf 141
                     79*************************************************************44444333221.1221..22222222222255 PP

             TCP  89 .........................kaaksaakskksqksaasalnlak.esrakarararertre 128
                                              ++++ +++ ++   +++++++l++ + rak ++ +r++++ 
  Neem_31015_f_1 142 fdvnssflkdggfhplisgkggikiNSSTVDEEDQSMMPKSNKFWDLDAsSLRAKGKEVERDQSNI 207
                     666667778888888888999987755555555556666666677777755566666665554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.98351109IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-2851206IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MISTSREKGF RAKQEGDTND SKFSKAPSSS SRHWSGFRNP RIVRVSRSFG GKDRHSKVCT  60
IRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVIDWLLD VTKSDIDKLP PLQIPQGFGQ  120
FHQQILLSHE SNASQSSLSP FFDVNSSFLK DGGFHPLISG KGGIKINSST VDEEDQSMMP  180
KSNKFWDLDA SSLRAKGKEV ERDQSNISQK GKWMMINEDK NQDGTASDYG TAVQKFFPVA  240
NHSSIPALLN SAMPFNPYYH WEPSNISLSQ YGNHEFLPQT ENSLYNNAIS MQSSLAFPSG  300
SHLFFCPPAT MPSLFPTYTP FVTTAPETHD SRQINHFQLL SSTSQHNILP NSLATSSQVK  360
PATFSLNVNP GLAHTQMNAE SNPDKEELAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1856110155Putative transcription factor PCF6
5zkt_B3e-1856110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037593.11e-166PREDICTED: transcription factor TCP5
TrEMBLA0A061G4Y71e-164A0A061G4Y7_THECC; Teosinte branched 1, putative
STRINGEOY220941e-165(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-61TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5