PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30902_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 772aa MW: 86086.1 Da PI: 7.3779 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.4e-24 | 169 | 270 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F ++++ Neem_30902_f_1 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyEQQ-RPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RSEN 260 99****************************97433.45679************************************************..4589 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ Neem_30902_f_1 261 GELRLGIRRA 270 999****996 PP | |||||||
2 | Auxin_resp | 124.7 | 6.5e-41 | 295 | 376 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++ha+stksvF+v+Y+Pras++eFv++++k+ ++++++++vG+Rfkm+fe++d++err+ G+v+g+sdldp+rWpnSkWr+L Neem_30902_f_1 295 VSHAISTKSVFHVFYSPRASHAEFVIPYQKYITSITNPICVGTRFKMRFEMDDAPERRCNGIVTGMSDLDPYRWPNSKWRCL 376 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.88E-44 | 162 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-41 | 163 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.43E-22 | 167 | 269 | No hit | No description |
Pfam | PF02362 | 9.3E-22 | 169 | 270 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.5E-24 | 169 | 271 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.211 | 169 | 271 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-34 | 295 | 376 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.63E-8 | 651 | 725 | No hit | No description |
PROSITE profile | PS51745 | 16.997 | 655 | 740 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MEIDLNHAAT TEVEKIAFCN GDCQKNSGCV YCLNSSPSSS SSSNSGSPSL SSSIYFELWH 60 ACAGPLTSLP KKGNVVVYFP QGNLEQVASS SPFPPIEVPN FDLQPQIFCK VVDVQLLANK 120 ENDEVYTQVA LLPQPELEGL NLKDKELEEL GVDEEGGGGS PRKSTPHMFC KTLTASDTST 180 HGGFSVPRRA AEDCFPPLDY EQQRPSQELI AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI 240 FVSQKNLVSG DAVLFLRSEN GELRLGIRRA VRPRNGLPDS ILTKQNSYPN VLSQVSHAIS 300 TKSVFHVFYS PRASHAEFVI PYQKYITSIT NPICVGTRFK MRFEMDDAPE RRCNGIVTGM 360 SDLDPYRWPN SKWRCLMVRW DEDIGSDHQE RVSPWEIDRS VSLPPLNIQS SPRLKKLRTS 420 LQATPPVYRV NAGGNGFLDF EESVRSSKVL QGQENVGFLS PLYGCDTASH ALDFEMRTPA 480 HQSLPLAGVR KDNVREFVRA RPTTYTGFME SNRFPKVLQG QEICPLRSLT RKVDLNLGTW 540 GKPNLGCNSF DMYQASKPSF YALPSESLQN MFFPYGDVHK TSKNHAVAVA GDEVRKANLL 600 SEHQSLESTL TPSLKTNIRN QKDGSFNGTA AGCKLFGFSL TAETPTPSSQ SSGKRSCTKV 660 HKQGSLVGRA IDLSRLNGYG DLLSELEQLF NMEGLLGDPE KGWRILYTDS ENDMMVVGDD 720 PWHAFSYGNT CAPRIFVIFQ LCFSFLSNTK MFRYTSKHNI FGAYAEGHVN AE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-121 | 39 | 407 | 2 | 356 | Auxin response factor 1 |
4ldw_A | 1e-121 | 39 | 407 | 2 | 356 | Auxin response factor 1 |
4ldw_B | 1e-121 | 39 | 407 | 2 | 356 | Auxin response factor 1 |
4ldx_A | 1e-121 | 39 | 407 | 2 | 356 | Auxin response factor 1 |
4ldx_B | 1e-121 | 39 | 407 | 2 | 356 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424619.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Refseq | XP_006488136.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A067GCZ5 | 0.0 | A0A067GCZ5_CITSI; Auxin response factor | ||||
STRING | XP_006424619.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |