PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_30856_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 676aa    MW: 76631.4 Da    PI: 6.6729
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_30856_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3572.8e-1093016703374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+av+s d + ++ lL+++++ ++p+gd +qRla+yf+++L+arla++       ++ps  +++++++ l+a+ ++  +sP+ k s+++
  Neem_30856_f_1 301 SLLTQCAQAVASYDRRTTNGLLKQIRQYSTPHGDGTQRLAHYFANGLEARLAGTA---TPYFSPSFLNRTSVADLLKAYMAYISASPFRKASNFL 392
                     79***************************************************33...3345677777778************************ PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +N++I +a+ + +r+HiiDf+is+GlQWp+++q  + Rp+gpp++RiTg++ p++g   +e++e+tg+rL+k+ e+++vpf++n+ +a+++e+l+
  Neem_30856_f_1 393 TNRTIGKAAGKTTRIHIIDFGISYGLQWPCFIQRQSFRPGGPPKIRITGIELPQPGfrPAERVEATGRRLKKVSERCNVPFDYNA-IAQKWETLT 486
                     *******************************************************9*****************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+++++E+++V ++++l +l+d++v ++s+rd+vLkl+k+++P+++v+   +  +ns+ F+ rf eal ++salfd++ea++++e++ r+  
  Neem_30856_f_1 487 YEDLKIDRDEVTIVTCMYRLNNLPDDTVLIKSPRDAVLKLIKRINPDLFVHGVTNGTYNSPFFFSRFREALLHFSALFDMFEATVSSEDQGRMIF 581
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Ere++gr+++nvvaceg er+   et+++W++r  +aGF+++pl+++  k+++ ++++ + + + ++e+ +++++gWk++ ++++S+W+
  Neem_30856_f_1 582 EREVIGRQAMNVVACEGLERTDSPETYKQWQARNLRAGFRQLPLDQELFKKVRNMVKMEYHRDFVIDENGHWMLQGWKGKVIYALSFWK 670
                     ************************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.786273650IPR005202Transcription factor GRAS
PfamPF035149.6E-107301670IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MDLTNQTPSS YSAPSLGTSS DGDSPYDCEN INFSYAVYKY IDDILMEEDV DGKTCMLQEC  60
LGLQATEKSF YDVLGQKYPP STNDHSPCIN QNGGSPDDNF VCSSRIGSND SYTATNNLVD  120
SSWIRHQPEF QSHLLQTSDV DCPESPLLLP NLHSEMQPFG HSRVGRYGDR ATSAPMSNSL  180
KSLVIEKEVV TESEKEEGNY SSDGLRERKN YRHEDGDCLE AERSSKHSVI LLEESEESDL  240
FDKVMIPKGG NYDSVPCPLF EAARNIVGLK FPHNEKIKGP NSRIMRMMKQ GNTSKLADLW  300
SLLTQCAQAV ASYDRRTTNG LLKQIRQYST PHGDGTQRLA HYFANGLEAR LAGTATPYFS  360
PSFLNRTSVA DLLKAYMAYI SASPFRKASN FLTNRTIGKA AGKTTRIHII DFGISYGLQW  420
PCFIQRQSFR PGGPPKIRIT GIELPQPGFR PAERVEATGR RLKKVSERCN VPFDYNAIAQ  480
KWETLTYEDL KIDRDEVTIV TCMYRLNNLP DDTVLIKSPR DAVLKLIKRI NPDLFVHGVT  540
NGTYNSPFFF SRFREALLHF SALFDMFEAT VSSEDQGRMI FEREVIGRQA MNVVACEGLE  600
RTDSPETYKQ WQARNLRAGF RQLPLDQELF KKVRNMVKME YHRDFVIDEN GHWMLQGWKG  660
KVIYALSFWK PVSVEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4730567324381Protein SCARECROW
5b3h_D3e-4730567324381Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488667.10.0scarecrow-like protein 9
RefseqXP_024035700.10.0scarecrow-like protein 9
TrEMBLA0A067G3750.0A0A067G375_CITSI; Uncharacterized protein
STRINGXP_006488667.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-173GRAS family protein