PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30856_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GRAS | ||||||||
Protein Properties | Length: 676aa MW: 76631.4 Da PI: 6.6729 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 357 | 2.8e-109 | 301 | 670 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+av+s d + ++ lL+++++ ++p+gd +qRla+yf+++L+arla++ ++ps +++++++ l+a+ ++ +sP+ k s+++ Neem_30856_f_1 301 SLLTQCAQAVASYDRRTTNGLLKQIRQYSTPHGDGTQRLAHYFANGLEARLAGTA---TPYFSPSFLNRTSVADLLKAYMAYISASPFRKASNFL 392 79***************************************************33...3345677777778************************ PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 +N++I +a+ + +r+HiiDf+is+GlQWp+++q + Rp+gpp++RiTg++ p++g +e++e+tg+rL+k+ e+++vpf++n+ +a+++e+l+ Neem_30856_f_1 393 TNRTIGKAAGKTTRIHIIDFGISYGLQWPCFIQRQSFRPGGPPKIRITGIELPQPGfrPAERVEATGRRLKKVSERCNVPFDYNA-IAQKWETLT 486 *******************************************************9*****************************.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L+++++E+++V ++++l +l+d++v ++s+rd+vLkl+k+++P+++v+ + +ns+ F+ rf eal ++salfd++ea++++e++ r+ Neem_30856_f_1 487 YEDLKIDRDEVTIVTCMYRLNNLPDDTVLIKSPRDAVLKLIKRINPDLFVHGVTNGTYNSPFFFSRFREALLHFSALFDMFEATVSSEDQGRMIF 581 *********************************************************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Ere++gr+++nvvaceg er+ et+++W++r +aGF+++pl+++ k+++ ++++ + + + ++e+ +++++gWk++ ++++S+W+ Neem_30856_f_1 582 EREVIGRQAMNVVACEGLERTDSPETYKQWQARNLRAGFRQLPLDQELFKKVRNMVKMEYHRDFVIDENGHWMLQGWKGKVIYALSFWK 670 ************************************************************999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.786 | 273 | 650 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.6E-107 | 301 | 670 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MDLTNQTPSS YSAPSLGTSS DGDSPYDCEN INFSYAVYKY IDDILMEEDV DGKTCMLQEC 60 LGLQATEKSF YDVLGQKYPP STNDHSPCIN QNGGSPDDNF VCSSRIGSND SYTATNNLVD 120 SSWIRHQPEF QSHLLQTSDV DCPESPLLLP NLHSEMQPFG HSRVGRYGDR ATSAPMSNSL 180 KSLVIEKEVV TESEKEEGNY SSDGLRERKN YRHEDGDCLE AERSSKHSVI LLEESEESDL 240 FDKVMIPKGG NYDSVPCPLF EAARNIVGLK FPHNEKIKGP NSRIMRMMKQ GNTSKLADLW 300 SLLTQCAQAV ASYDRRTTNG LLKQIRQYST PHGDGTQRLA HYFANGLEAR LAGTATPYFS 360 PSFLNRTSVA DLLKAYMAYI SASPFRKASN FLTNRTIGKA AGKTTRIHII DFGISYGLQW 420 PCFIQRQSFR PGGPPKIRIT GIELPQPGFR PAERVEATGR RLKKVSERCN VPFDYNAIAQ 480 KWETLTYEDL KIDRDEVTIV TCMYRLNNLP DDTVLIKSPR DAVLKLIKRI NPDLFVHGVT 540 NGTYNSPFFF SRFREALLHF SALFDMFEAT VSSEDQGRMI FEREVIGRQA MNVVACEGLE 600 RTDSPETYKQ WQARNLRAGF RQLPLDQELF KKVRNMVKME YHRDFVIDEN GHWMLQGWKG 660 KVIYALSFWK PVSVEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-47 | 305 | 673 | 24 | 381 | Protein SCARECROW |
5b3h_D | 3e-47 | 305 | 673 | 24 | 381 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488667.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_024035700.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A067G375 | 0.0 | A0A067G375_CITSI; Uncharacterized protein | ||||
STRING | XP_006488667.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-173 | GRAS family protein |