PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_30801_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 273aa MW: 30339.9 Da PI: 6.9508 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 28.4 | 3.6e-09 | 219 | 242 | 2 | 25 |
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 +r+ W+p+LH+rFv+a++ LGG + Neem_30801_f_1 219 NRRSWSPQLHARFVNALNILGGVQ 242 799*******************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-6 | 217 | 243 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MGSSSLELTL SLKPSYVPKT ISNLLSDLSK IDSASDKLSL LNDYLQKYQE ELSRVQDLKR 60 ELPQCMLLLM DAIETLKEEI VSVGNSKEPD SDKPLMEFLS MKRKLYENPE ERILWNNPIP 120 DKKQKAILHP TQALSLTPIQ PCKKSKTEVP LMAARGSSGT GSLLLPVSTV EKQRGKEPAV 180 ANIPPEPGTV GIGGLNLRTD PITLNYHPEP LTEKIWKNNR RSWSPQLHAR FVNALNILGG 240 VQDLSSYIFG YLFELTTSPL SAITLVDPDH NLG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974521.1 | 8e-63 | PREDICTED: myb family transcription factor EFM |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15410 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-14 | G2-like family protein |