PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3062_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YA
Protein Properties Length: 315aa    MW: 34070.6 Da    PI: 9.2259
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3062_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.44.1e-32146202158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh+hA+rR+Rg+gGrF
  Neem_3062_f_1 146 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKVRKPYLHESRHQHAMRRARGCGGRF 202
                    69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.7E-37144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.506145205IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-27147202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23148170IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MPAKPDEDRH LEHGVNSVLQ STIYSQHWWS GTGTGTALAE AASQSSRDQT NGSVANGASH  60
SQDGNNGLEH VHLKHIPSGT PLSMGEHLEQ NSQMELVGHS IVLTSYPYSE PQHGGVMTPY  120
GPQAMIPPQL YGMPHARMPL PLEMEEEPVY VNAKQYRGIL RRRQSRAKAE LEKKVIKVRK  180
PYLHESRHQH AMRRARGCGG RFLNTKNLNN SAANPSGTGI NSGANPSTES ANFSGSKRSS  240
TNDTGNTDSS IVQQEELMDK NMHGTHTSSN GNSNGHNLLS MYNSASSGSM EGNFLGQQRG  300
SMQGNGAPRG ALPVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19146220276NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439109.11e-161nuclear transcription factor Y subunit A-4
RefseqXP_006482871.11e-161nuclear transcription factor Y subunit A-4-like
TrEMBLA0A067GUM51e-162A0A067GUM5_CITSI; Uncharacterized protein
STRINGXP_006482871.11e-161(Citrus sinensis)
STRINGXP_006439109.11e-161(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160191014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-37nuclear factor Y, subunit A1