PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_3061_f_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 411aa MW: 46118.6 Da PI: 6.7 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.8e-15 | 102 | 147 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W++Ia+++ gR++k+c++rw++ Neem_3061_f_7 102 RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 147 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.4 | 3.4e-18 | 154 | 197 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ Neem_3061_f_7 154 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 197 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.888 | 97 | 148 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-13 | 101 | 150 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.74E-28 | 102 | 195 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-15 | 102 | 147 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 103 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.13E-12 | 105 | 146 | No hit | No description |
PROSITE profile | PS51294 | 27.592 | 149 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-15 | 153 | 201 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 154 | 196 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-21 | 156 | 202 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.36E-12 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGVQFLLLLK IFIPCKSSEM ENEGACWSFP FMENGSSTTG NFEEQHNIDV NVVSKGSDCS 60 DGFGENSESM IHDIDLNEEF NPNENSVTGK ETDGGQTKIC ARGHWRPAED TKLKELVGLY 120 GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFTEE EEERLMQAHR LYGNKWAMIA 180 RLFPGRTDNA VKNHWHVIMA RKYREQSSAY RRRKLNQSIY RRIEDMPNFV GKDAAAGRFE 240 QQLLQQPYCL NIPNGGLGNL SPFPYGNFNG GGVGFDYCLN GSPYMVIGQE AISINKVPHS 300 GFFAQHMTSD LFSAGPKSND MMGMFSHNIR SWDTPLDEPH ISAFNPKYLM AMQQSNVHNH 360 PDSFLHSTAS NPQVSGSEAS SSSVPAGNRS VASRFDTIPP PFIDFLGVGA R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-34 | 102 | 202 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387159.2 | 1e-172 | transcription factor CSA-like | ||||
Refseq | XP_024042187.1 | 1e-172 | transcription factor CSA | ||||
TrEMBL | A0A067GW84 | 1e-174 | A0A067GW84_CITSI; Uncharacterized protein | ||||
STRING | POPTR_0008s08760.1 | 1e-167 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 7e-78 | myb domain protein 105 |