PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3043_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 362aa MW: 41918.7 Da PI: 8.1748

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3043_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.3	1.1e-47	54	179	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ppG+rF+P+d el+ +yL+kk+ +++l+ + ik v++y+++P++L ++++ +ekewyfF++rd+ky++g+r+nra+++gyWkatg dk+v+ k Neem_3043_f_3 54 PPGYRFKPHDVELLIHYLQKKILNQPLPP-NRIKVVELYRFNPKKLTeSSMSLGEKEWYFFTPRDRKYPNGQRPNRAATDGYWKATGADKPVKY-K 147 9***********************999.77**********856888899*****************999***********.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg kk+Lvfy+g+ap+g+kt+W+mheyr+ Neem_3043_f_3 148 NNTVGFKKSLVFYEGKAPRGSKTNWIMHEYRV 179 899*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-55	52	206	IPR003441	NAC domain
PROSITE profile	PS51005	53.535	53	206	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	54	179	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDHKQKQQQQ LNIEGINPSS QNPDGESLAN DMSYRPTADD RSPTADDSYL DTFPPGYRFK 60 PHDVELLIHY LQKKILNQPL PPNRIKVVEL YRFNPKKLTE SSMSLGEKEW YFFTPRDRKY 120 PNGQRPNRAA TDGYWKATGA DKPVKYKNNT VGFKKSLVFY EGKAPRGSKT NWIMHEYRVN 180 NNPPRKRSNL NDMRLDDWVL CRIQQKNRSA TCKRDNSVQE QQIEIDSETA TQSQDSAQIP 240 VNGPKRQRTG VLKPAGLGVG DMSDYYKQGR FFHEYDDILS PYLNFPHSQG SQDLLPTFLQ 300 PYPHPLGLDN LFHQNPSSLA EESTSPRLKF QPTDSRMKPE QLGYHPDDYW DIPSEDNFFD 360 PL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDHKQKQQQQ LNIEGINPSS QNPDGESLAN DMSYRPTADD RSPTADDSYL DTFPPGYRFK  60
PHDVELLIHY LQKKILNQPL PPNRIKVVEL YRFNPKKLTE SSMSLGEKEW YFFTPRDRKY  120
PNGQRPNRAA TDGYWKATGA DKPVKYKNNT VGFKKSLVFY EGKAPRGSKT NWIMHEYRVN  180
NNPPRKRSNL NDMRLDDWVL CRIQQKNRSA TCKRDNSVQE QQIEIDSETA TQSQDSAQIP  240
VNGPKRQRTG VLKPAGLGVG DMSDYYKQGR FFHEYDDILS PYLNFPHSQG SQDLLPTFLQ  300
PYPHPLGLDN LFHQNPSSLA EESTSPRLKF QPTDSRMKPE QLGYHPDDYW DIPSEDNFFD  360
PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-56	53	206	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453411.1	1e-129	NAC transcription factor 29
Refseq	XP_024953202.1	1e-129	NAC transcription factor 29-like
TrEMBL	V4UVG0	1e-128	V4UVG0_9ROSI; Uncharacterized protein
STRING	XP_006474629.1	1e-129	(Citrus sinensis)
STRING	XP_006453411.1	1e-129	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17542	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	9e-60	NAC domain containing protein 25