PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3037_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family FAR1
Protein Properties Length: 1952aa    MW: 219052 Da    PI: 6.5395
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3037_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1256.1e-08128913602490
           FAR1   24 rngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90  
                     + g   + t++C +eg+++++ k+     ek+ r+++++++gC  +lk +k   d++w ++ +   HnH+++
  Neem_3037_f_1 1289 DGGPKARITLCCEREGQNRRTGKNkedkMEKQLRNSSTKKCGCPFTLKGRKLGsDDNWILEVVCGVHNHPIT 1360
                     555667889*********999988776556666788888888888888877767***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575131No hitNo description
Gene3DG3DSA:2.60.40.106.4E-6505593IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.0E-17506592IPR014756Immunoglobulin E-set
PfamPF018331.7E-6506591IPR002909IPT domain
CDDcd002041.14E-12689798No hitNo description
Gene3DG3DSA:1.25.40.209.9E-17690802IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-17695800IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.582706800IPR020683Ankyrin repeat-containing domain
PfamPF127964.8E-7711801IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0092739768IPR002110Ankyrin repeat
PROSITE profilePS500889.564739771IPR002110Ankyrin repeat
SMARTSM00248460778807IPR002110Ankyrin repeat
SuperFamilySSF525403.98E-7910962IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001512911933IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.199913941IPR000048IQ motif, EF-hand binding site
PfamPF006120.075913932IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0097934956IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.505935959IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-4939956IPR000048IQ motif, EF-hand binding site
PfamPF087311.1E-512181359IPR014842Transcription factor AFT
PfamPF105516.0E-2114481535IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1952 aa     Download sequence    Send to blast
MFEKNYIIFE LTWYTILQYG YCFLSSSIQS CTNIFQGNRT NFNRIKATEG TTPYIQETEE  60
TIPNSEVEGS QSSSFHPNSY QMRSQTTDTT SLNTAQASEF EDVESVCNNQ ASSSFCSFLD  120
SKQPVTENID AGLSDPYYPT LFTTSSSFCS FLDSKQPVTD KIDAGLSDPY YPTLFTNAVP  180
VLCWLSNCLT DNYQGKYSAI TGADFISPAQ ADKIRVANDA GLTYEHQKNL DFLPWEDVSR  240
NCARGIGSQP FPTFSSTQPE NLGNLAKQGH EILGELFTNS FGERKEFGSH VEIQGEWQTS  300
KDDSSHLPNW PTDQKLYSDL AHDPTSRSRE QEVACDDLLN SLQPPNAHRN MQKNLHAQLS  360
NAECGHLQKS DSESNLTVEG KSIYSSDIKP HLFDGSTEEG LKKIDHLLKS DSESNLTVEG  420
KSIYSPAIKP HLFDGSTEEG LKKIDSFNRW IRKEIGDVES NMQSSSGAYW ETVESENGHD  480
SGIPAQEHLD SYMLSPSISQ DQLYSIIDFS PNWAYVGSEV KVLITGRFLL SQQEAEKCKW  540
SCMFGEVEVP AEIVAGGVLR CHTPSQKVGR VPFYVTCSNR LACSEVQEFE YRANHVQDVD  600
TSNNYGDDTG VSLRMRLGKL LCLSSVNTSN GDPSNQTDIF QLKSKISSLL KEENDGWDQM  660
LKFTENFSLG DVQEKLLQKH MKEKLQVWLL QKAAEGGKGP SLLDEDGQGV LHFAAALGYD  720
WALEPTVVAG VNINFRDVNG WTALHWAAYC GRERTVASLI SLGAAPGALS DPTPTYPLGQ  780
TPADLAASVG HKGIAGYLAE SALSSHLSAI ILNKHDSDAA EINGAKVVQT VSQRPPTPIS  840
HGDLPHKLSL KNSLAAICNA RQAAARIQQV FRLQTFQKKQ LKEYGDETFG ISDECALSLL  900
AVKSHKAGHH DVHAAAIRIQ NKFRSWKGRK DFLIIRQQIV KIQAHVRGHQ VRKNYKTIVW  960
SVGILENVIL RWRRKGSGLR GFKSEALTEG GSSMLDTSSN EDDFDFLKEG RKQKEERLQK  1020
ALARVKSMVQ YPEARNQYCR LLNVVNEIQE TKALVLNNSE ETVDFDEDLM DIAAQPDNDI  1080
FMPLKDHNSQ LKEDFMEECA QGVGSQPFHP PSSSTQPDTC KKGQEILGQL STNSSDCAQG  1140
VGSQPFHPPS PSTQPDTCKQ GHEILGQLYT SSFSIREEFG SHLRIQGESK SMTSIQSTDV  1200
GSESVMDYTN EFTNYEIFKS KQALIQWTRE VGRKNGFVIV IKRSDSGDSG QKARITLCCE  1260
REGQNRSTGK NKEDKKEKWL RNTRSDSGDG GPKARITLCC EREGQNRRTG KNKEDKMEKQ  1320
LRNSSTKKCG CPFTLKGRKL GSDDNWILEV VCGVHNHPIT KPLEGRSYAG SLSKEETSLV  1380
IDMSKSMIPP KDILMTLKNR DANNASTIKQ IYNARQRYNK VIGMIERSQM QQLLNKLFER  1440
NYIEGHRHKA NRYNLPLLEI IGVTSTNMTF AIAFAYLESG LEDNYVWALE KLRNIMDDNA  1500
LPTIILSDKE MALMKAIQRV FPSTKHLLGR WHISRSVSIN CKKLFAINQI WERFMVSWNA  1560
VVLSSNQDEF SNRLNNLKQE FSGYPQAVEY HWKLTFKVEE ATSSQSRASF EKSLTVVQDQ  1620
FKHAEFKELR GFISINALHV ILSELKRAHS IGVDLSTCGC IIRRTHGLPC AHEIAEFKRE  1680
SQPIPLKSID LYWRKLDLVP VFKKQKTKLG YAPVVDLVTE SFDETGDGTN LGNLKKLTEI  1740
ANPQFTSPTE PEAKKELHGQ PNSKDVPRDG NCGFPVLADL MGFGENGWSR VRMDLLNELN  1800
SNLELYGRLY RMYGTNTRVE ELRHALSYFV SGPPCDRWMT MPDMGHLIAS AYHVVLFHLS  1860
SRQCLTFLPL RSLPMPIDSR REIAIGFVEN THFVKVFLVA HHPIPPIADS WYNYRHPCAK  1920
EWETAYTSRI TKIIGNDVAT DEIVDTDSIS CD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428204.10.0calmodulin-binding transcription activator 3
TrEMBLA0A067EZ920.0A0A067EZ92_CITSI; Uncharacterized protein
STRINGXP_006428204.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1