PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30361_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 150aa MW: 17623.3 Da PI: 9.8928 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.6 | 1.8e-51 | 6 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd elv++yLk+kv g+kl + +i+evdiyk+ PwdLp k ++++++ +wyfF++r+kky++g r nrat+ gyWk+tgkd++v+ Neem_30361_f_1 6 LPPGFRFHPTDVELVKYYLKRKVMGRKLYE--AIAEVDIYKFAPWDLPdKsCLRSGDLKWYFFCPREKKYSNGGRMNRATELGYWKTTGKDRPVH 98 79*************************665..8**************96347788889************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+vg+ ktL+f++g+ap+g++tdWvmheyr+ Neem_30361_f_1 99 Y-NNEVVGMIKTLIFHRGKAPQGHRTDWVMHEYRI 132 *.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-55 | 3 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.411 | 6 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MAKTSLPPGF RFHPTDVELV KYYLKRKVMG RKLYEAIAEV DIYKFAPWDL PDKSCLRSGD 60 LKWYFFCPRE KKYSNGGRMN RATELGYWKT TGKDRPVHYN NEVVGMIKTL IFHRGKAPQG 120 HRTDWVMHEY RIDEKDLAER GVVQGVHALE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 2 | 132 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432239.1 | 4e-91 | NAC domain-containing protein 82 isoform X1 | ||||
Refseq | XP_006432240.1 | 4e-91 | NAC domain-containing protein 82 isoform X1 | ||||
Refseq | XP_006464643.1 | 4e-91 | NAC domain-containing protein 82-like | ||||
Refseq | XP_024039820.1 | 4e-91 | NAC domain-containing protein 82 isoform X2 | ||||
Refseq | XP_024039821.1 | 3e-91 | NAC domain-containing protein 82 isoform X3 | ||||
Swissprot | Q9FY82 | 1e-73 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A067ET28 | 8e-90 | A0A067ET28_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PWZ5 | 8e-90 | A0A2H5PWZ5_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SD00 | 9e-90 | V4SD00_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4V129 | 9e-90 | V4V129_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464643.1 | 1e-90 | (Citrus sinensis) | ||||
STRING | XP_006432239.1 | 1e-90 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 2e-76 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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