PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3034_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 562aa MW: 64540.5 Da PI: 7.7602

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3034_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.7	3e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw ++++++eHnHel p Neem_3034_f_1 29 YYREYAKSMGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKQNGKWFIYSFVKEHNHELLP 114 8*************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-24	29	114	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.3E-9	316	350	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.769	316	352	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-7	327	354	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDSSEITGST ILEPRDDMEF ESHEAAYAYY REYAKSMGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKQNGKWF IYSFVKEHNH ELLPAQAHFF 120 RSHRNVDPLK NDVRIRRRKN LAAVSKLFSA YQNVDCLESY MRNQHDKGRS LILDPGDSQW 180 IQSLYEDRKH WVPTFMKGVS FAALSTPSRS ESLNSLFDKY VHGETLLREF IEQYRVIRED 240 MYEEEAKADF DAWHETPELK SPSPFEKQMS LVYTHEIFKK FQVEVLGAAA CHLKKENEIE 300 TITTYDVKDF EDNQNYLVEW DESKSDIYCS CRSFEYKGYL CRHAIIVLQM SGVFSIPSKY 360 ILQRWTNAAK SRHSISERLD EVQSKVRRYN DLCRRAIILG EEGSISQESY DIALCAIQEA 420 LKQCASLNNS VESNAKPINS DVLSICGTEE ENQFGNTSKD KAPRHLVTNT NTNPNRADSG 480 KGKGNNVNNA AKKGKVTQQG MWNVATQDGC HQVQELSDMR PTQLHNLVQT PLQVLPTMFH 540 NVAPAQFHNM PTTHLQDNRL PH

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDSSEITGST ILEPRDDMEF ESHEAAYAYY REYAKSMGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKQNGKWF IYSFVKEHNH ELLPAQAHFF  120
RSHRNVDPLK NDVRIRRRKN LAAVSKLFSA YQNVDCLESY MRNQHDKGRS LILDPGDSQW  180
IQSLYEDRKH WVPTFMKGVS FAALSTPSRS ESLNSLFDKY VHGETLLREF IEQYRVIRED  240
MYEEEAKADF DAWHETPELK SPSPFEKQMS LVYTHEIFKK FQVEVLGAAA CHLKKENEIE  300
TITTYDVKDF EDNQNYLVEW DESKSDIYCS CRSFEYKGYL CRHAIIVLQM SGVFSIPSKY  360
ILQRWTNAAK SRHSISERLD EVQSKVRRYN DLCRRAIILG EEGSISQESY DIALCAIQEA  420
LKQCASLNNS VESNAKPINS DVLSICGTEE ENQFGNTSKD KAPRHLVTNT NTNPNRADSG  480
KGKGNNVNNA AKKGKVTQQG MWNVATQDGC HQVQELSDMR PTQLHNLVQT PLQVLPTMFH  540
NVAPAQFHNM PTTHLQDNRL PH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046041.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	1e-146	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2H5NMJ7	0.0	A0A2H5NMJ7_CITUN; Uncharacterized protein
STRING	XP_006493664.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-141	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]