PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_30069_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 718aa MW: 79359.4 Da PI: 6.2936 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 9.1e-20 | 52 | 107 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Neem_30069_f_1 52 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 107 688999***********************************************998 PP | |||||||
2 | START | 181.9 | 3.5e-57 | 241 | 459 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S..EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla..kaetlevi 85 ela +a++el+++a+a+ep+W e++n+de+l++f+++ + ++ea+r+s vv+m++ +lve+l+d+++ +++ + Neem_30069_f_1 241 ELAVAAMEELMRMAQAGEPLWIPGEnctEMLNEDEYLRTFPRGIGpkplgLRSEASRESSVVIMNHINLVEILMDVAK---SMVKcvLRYCFKSY 332 57899*****************999999**************999********************************5...44443312233444 PP CTT.........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 86 ssg.........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ++g l +ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ p + +++++pSg+li++++ng+skv+wvehv Neem_30069_f_1 333 DPGspinrsrrkLQWSLASAEFQVPSPLVPtRENYFVRYCKQHPDGTWAVVDVSLDSLRPSP----ISKCRRRPSGCLIQELPNGYSKVIWVEHV 423 444555555644888899******************************************99....689999*********************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r++h+++r++v+ gla+gak+wvatl+rqce+ Neem_30069_f_1 424 EVDDRSVHEIYRPVVNCGLAFGAKRWVATLDRQCER 459 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-22 | 37 | 107 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.38E-19 | 38 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.422 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-19 | 50 | 113 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-17 | 52 | 107 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.75E-19 | 52 | 110 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 4.58E-30 | 232 | 461 | No hit | No description |
PROSITE profile | PS50848 | 35.703 | 232 | 462 | IPR002913 | START domain |
CDD | cd08875 | 4.15E-101 | 236 | 458 | No hit | No description |
SMART | SM00234 | 2.3E-49 | 241 | 459 | IPR002913 | START domain |
Pfam | PF01852 | 5.7E-47 | 242 | 459 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-4 | 359 | 458 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.8E-27 | 479 | 710 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MFESDHMFDM TSKSSESDLG KLKDDDYETK SGTETMEIPS GDDQDPSQCP KKKRYHRHTQ 60 RQIQEMEAFF KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKAQQ ERHENQILKA 120 ENEKLRAENN RYKEALGNAT CPNCGGPAAL GEMSFDEQHL RIENARLREE IDRISAIAAK 180 YVGKPLSSFP HLSSHLPSRS LDLGFNNLGT QSGFVGEMYG GGDLIRSISG PTEADKPMIV 240 ELAVAAMEEL MRMAQAGEPL WIPGENCTEM LNEDEYLRTF PRGIGPKPLG LRSEASRESS 300 VVIMNHINLV EILMDVAKSM VKCVLRYCFK SYDPGSPINR SRRKLQWSLA SAEFQVPSPL 360 VPTRENYFVR YCKQHPDGTW AVVDVSLDSL RPSPISKCRR RPSGCLIQEL PNGYSKVIWV 420 EHVEVDDRSV HEIYRPVVNC GLAFGAKRWV ATLDRQCERL ASSMASNIPA GDLCVITSPE 480 GRKSMLKLAE RMVTSFCTGV GASTAHAWTT LSATGSDDVR VMTRKSMDDP GRPPGIVLSA 540 ATSFWIPVPP KRVFDFLRDE NSRSEWDILS NGGLVQEMAH IANGREPGNC VSLLRVNSAN 600 SSQSNMLVLQ ESCTDSTGSY VIYAPVDIVA MNMVLSGGDP DYVALLPSGF AILPDGPGLN 660 GGRILEVGSG GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIKCTVERIK AAVMCDNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021294392.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_021294395.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_021294396.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_021294397.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A061GGE7 | 0.0 | A0A061GGE7_THECC; Protodermal factor 2 isoform 1 | ||||
STRING | EOY28624 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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