PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 32203.2 Da PI: 9.0189 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.3 | 3.1e-07 | 24 | 67 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+eE +++ a + + +W ++a++++ g+t +++ + Neem_29_f_3 24 SWTKEENKRFESALAIYSEStpdRWIKVAAMIP-GKTVLDVIKQY 67 7*****************98*************.***99998776 PP | |||||||
2 | Myb_DNA-binding | 42.1 | 2e-13 | 124 | 168 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++++ ++G+g+W+ I+r + +t+ q+ s+ qky Neem_29_f_3 124 PWTEEEHLQFLKGLMKYGKGDWRNISRNFVISKTPTQVASHAQKY 168 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.82 | 20 | 75 | IPR017884 | SANT domain |
SMART | SM00717 | 5.3E-7 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.44E-11 | 23 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.61E-6 | 24 | 70 | No hit | No description |
Pfam | PF00249 | 6.2E-6 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-12 | 114 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.212 | 117 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.47E-15 | 119 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-17 | 120 | 172 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.0E-12 | 121 | 171 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-12 | 124 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.47E-10 | 124 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
METLYPASYM SNSNWFLQQN QSTSWTKEEN KRFESALAIY SESTPDRWIK VAAMIPGKTV 60 LDVIKQYEEL EEDISNIEAG KIPIPGYLSS SFTLELVPER DYDANRKKPL VAKNSDHERK 120 KGVPWTEEEH LQFLKGLMKY GKGDWRNISR NFVISKTPTQ VASHAQKYFI RQLSGGKDKR 180 RPSIHDITTV NLTDKTLSDD LKPPSFDQSN MLSAQQKSLS MPKFGSEWNG SNNGASMVFN 240 STNTNLFMPS AYEFGSDGLK LQGQNLYHTA YHGAHIRPQT SLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-16 | 25 | 90 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435669.1 | 1e-167 | transcription factor DIVARICATA | ||||
Refseq | XP_006486372.1 | 1e-167 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-94 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A067G073 | 1e-166 | A0A067G073_CITSI; Uncharacterized protein | ||||
STRING | XP_006486372.1 | 1e-167 | (Citrus sinensis) | ||||
STRING | XP_006435669.1 | 1e-167 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-95 | MYB family protein |
Publications ? help Back to Top | |||
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