PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29920_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 262aa    MW: 30279.1 Da    PI: 4.6674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29920_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.61.9e-261012291128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp G+rF P+d+el++ yL  k+ gk ++  + i ++++ +++P +Lp   + + +e yfF++ + k  +g+  + ++k+gyW++ g d +v+s 
  Neem_29920_f_1 101 LPLGYRFWPSDDELIKPYLYSKILGKAVPP-HPIIDINLSDYDPDKLPFDENCKPNEAYFFTCLEYKRVKGSVLRVVAKNGYWETRGGDVPVFSD 194
                     699************************999.7899*************76667889************999999889*****************8 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  vg kk  +f  g+ap g+k+ W m e rl
  Neem_29920_f_1 195 keRKMMVGFKKNWTFLFGDAPAGKKSIWSMSELRL 229
                     555556**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3096259IPR003441NAC domain
PROSITE profilePS5100531.209101260IPR003441NAC domain
PfamPF023654.9E-13102229IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEGRSNINVL IPENTFKEDT TMKECNGTSS DDEEEEEETT KEYYSTSSDE EETTDKYSSL  60
SSDEEDMNKE LEQQKAKSEV ESALRSFNAR LEERSIHGIV LPLGYRFWPS DDELIKPYLY  120
SKILGKAVPP HPIIDINLSD YDPDKLPFDE NCKPNEAYFF TCLEYKRVKG SVLRVVAKNG  180
YWETRGGDVP VFSDKERKMM VGFKKNWTFL FGDAPAGKKS IWSMSELRLN PRLIPTNQIQ  240
IDDNLKFKMV NYAVCKIKKQ LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2010122915140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437964.12e-63NAC domain-containing protein 45
RefseqXP_006484172.12e-63NAC domain-containing protein 45-like
TrEMBLA0A2H5NWH15e-62A0A2H5NWH1_CITUN; Uncharacterized protein
TrEMBLV4VFG25e-62V4VFG2_9ROSI; Uncharacterized protein
STRINGXP_006484172.18e-63(Citrus sinensis)
STRINGXP_006437964.18e-63(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2298234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-21NAC family protein