PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_29677_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 243aa MW: 26795.3 Da PI: 10.0436 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.6 | 2.7e-30 | 145 | 201 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RR++Rak+ e+kl +k rkpy+h SRh hA+rRpRg+gGrF Neem_29677_f_1 145 DGPIYVNAKQYHGIMRRRKSRAKAVLENKL-TKRRKPYMHYSRHLHAMRRPRGCGGRF 201 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.0E-34 | 143 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.776 | 144 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.1E-22 | 147 | 169 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.8E-26 | 147 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.1E-22 | 178 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MAMQTVYFKE HEGNAHNQIG QFSSVQSTPW WTSLGSQSLC GGLMKPFSME TPTEQSGQRM 60 EKGSTTHFTF FPGDSKSSGD GQKLPAAISL QSALPENPGF FELGFGQPMI CAKYPYVDQC 120 CGVFSTYGAQ ISGRIMLPLN LASDDGPIYV NAKQYHGIMR RRKSRAKAVL ENKLTKRRKP 180 YMHYSRHLHA MRRPRGCGGR FLNTRNADGH GNGNGNENGK GGTEEKKAGD PLLPQPTGSQ 240 TWK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-17 | 145 | 208 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 158 | 163 | MRRRKS |
2 | 160 | 178 | RRKSRAKAVLENKLTKRRK |
3 | 160 | 179 | RRKSRAKAVLENKLTKRRKP |
4 | 161 | 179 | RKSRAKAVLENKLTKRRKP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006481615.1 | 1e-127 | nuclear transcription factor Y subunit A-10 | ||||
Swissprot | Q8LFU0 | 5e-56 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A067FTI6 | 1e-126 | A0A067FTI6_CITSI; Uncharacterized protein | ||||
STRING | XP_006481615.1 | 1e-126 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06510.2 | 4e-58 | nuclear factor Y, subunit A10 |
Publications ? help Back to Top | |||
---|---|---|---|
|