PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29451_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 22024.4 Da PI: 10.9946 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 19 | 58 | 8 | 47 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E+ ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky Neem_29451_f_1 19 EHRVFLIGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 58 9999999********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.76 | 13 | 63 | IPR017930 | Myb domain |
CDD | cd00167 | 7.24E-5 | 17 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 17 | 58 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-13 | 18 | 62 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 8.97E-13 | 18 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-6 | 19 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDISPMASIL LLRKTGKREH RVFLIGLEKL GKGDWRGISK NFVTTRTPTQ VASHAQKYFL 60 RQKTLLLHNH NRNRKRRPSL FDVGSHKFAH KLLLNTSSTT STTANPDAAA GGLLLKATKA 120 SLPSNSGDKN ICDFELAATS QNSSPKCLTE SSFIFKPETS FDITMPRAAS APPNLELTLA 180 SPTPLAQTKA CARGLLIGAI SVV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475946.1 | 5e-61 | transcription factor MYBS3-like isoform X2 | ||||
TrEMBL | V4UIJ0 | 4e-59 | V4UIJ0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006450815.1 | 7e-60 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 4e-24 | MYB_related family protein |