PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_29285_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 965aa MW: 109553 Da PI: 6.7989

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_29285_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.6	4.3e-23	156	241	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YAke+GFsvrk k + +g+i kr f Cs+eg+r ++++ ++++ +r+etrtgC+a++k + e +gkw+++ + HnH+l Neem_29285_f_1 156 KFYISYAKEIGFSVRKGKVWRL-SDGTIRKRFFFCSREGYRVKKQSG-KTTKYQRKETRTGCEAMVKFTIE-NGKWVISGFIPTHNHDL 241 6*****************98.7888************9999.99999*************9.*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-20	156	241	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-23	353	446	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.903	631	669	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-5	639	668	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-6	644	671	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
DHVPVTAPPL HNLEATSTSV FDSERCWISD LPQPGRNNSS SDCWSAASEP GSLNILPEAS 60 FKVGNAEGEN GNVAEMIIHD QELGNQQMEH SLKHIPSCNT HLLSLETNGE DFMFSESDED 120 EIQSESTVNL KEETFRGNSP IPEVGMVFSS EEEAYKFYIS YAKEIGFSVR KGKVWRLSDG 180 TIRKRFFFCS REGYRVKKQS GKTTKYQRKE TRTGCEAMVK FTIENGKWVI SGFIPTHNHD 240 LEGLPKLMVG SSTNISGAHS MSVTMNKAGI LKEAGPANSV GFYSIDCTSF SHDERTSMPQ 300 LVDGQSLMNY FRHLQMEDPS FFYSVQVNAE NCLTNFFWSD GRSKLDYDYF GDVLIMDKTF 360 RIDAYNMTYA TFLGINHHQQ YVLFGGAFLL DDSKDSFIWL LRTFLDAMGR RQPKTIFTDG 420 YQAMADAIEA VLPKTHHCCG IWYILQSAKK HLSNCYGQTG FDIIFNECIF DCESEEEFES 480 RWESLLAQYD LHENPWLKTL YTLRRKWCHC FCENIFSAGI QSIQGCQSIS HFLHSLTNKI 540 MTPLQLVQQY SKVAEQQRRK ELYEDFHGNE SAPATILRSN AIEKEAAKIY TCSMFKLFRE 600 ELLGCLSVAV ETIPGDGITT KFRLTDNSNK KEKIVEFDSS ESHLTCTCKK YESVGILCVH 660 VLKVLNTRNI FQIPTQYILK RWTKLAKEGM IVDGHEGEIV DDSRSLCLHK SKLMHKAVHV 720 ITKSLAVEET GMIVEDSLNM ALRKVEDILR TKNTVHLNRE VDVHYKDDVA DANDIVCVET 780 QQMKSNSVTI NQQEASNCSI ESQLKKRKHE NEVRETKCKS SDNFVAHHHS FKAAAKGGDD 840 KGSRRGASRS YCMGENSRQS AFISHRPPLP SQSTCLQFKD PSRSTGNVQL ATQLTREEMQ 900 KEISKLRNEN QRILKLFVSM RADNSFQQFI KKNKVIQQEN LALPCQIKAI RGDNAKLSVV 960 SESLP

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

DHVPVTAPPL HNLEATSTSV FDSERCWISD LPQPGRNNSS SDCWSAASEP GSLNILPEAS  60
FKVGNAEGEN GNVAEMIIHD QELGNQQMEH SLKHIPSCNT HLLSLETNGE DFMFSESDED  120
EIQSESTVNL KEETFRGNSP IPEVGMVFSS EEEAYKFYIS YAKEIGFSVR KGKVWRLSDG  180
TIRKRFFFCS REGYRVKKQS GKTTKYQRKE TRTGCEAMVK FTIENGKWVI SGFIPTHNHD  240
LEGLPKLMVG SSTNISGAHS MSVTMNKAGI LKEAGPANSV GFYSIDCTSF SHDERTSMPQ  300
LVDGQSLMNY FRHLQMEDPS FFYSVQVNAE NCLTNFFWSD GRSKLDYDYF GDVLIMDKTF  360
RIDAYNMTYA TFLGINHHQQ YVLFGGAFLL DDSKDSFIWL LRTFLDAMGR RQPKTIFTDG  420
YQAMADAIEA VLPKTHHCCG IWYILQSAKK HLSNCYGQTG FDIIFNECIF DCESEEEFES  480
RWESLLAQYD LHENPWLKTL YTLRRKWCHC FCENIFSAGI QSIQGCQSIS HFLHSLTNKI  540
MTPLQLVQQY SKVAEQQRRK ELYEDFHGNE SAPATILRSN AIEKEAAKIY TCSMFKLFRE  600
ELLGCLSVAV ETIPGDGITT KFRLTDNSNK KEKIVEFDSS ESHLTCTCKK YESVGILCVH  660
VLKVLNTRNI FQIPTQYILK RWTKLAKEGM IVDGHEGEIV DDSRSLCLHK SKLMHKAVHV  720
ITKSLAVEET GMIVEDSLNM ALRKVEDILR TKNTVHLNRE VDVHYKDDVA DANDIVCVET  780
QQMKSNSVTI NQQEASNCSI ESQLKKRKHE NEVRETKCKS SDNFVAHHHS FKAAAKGGDD  840
KGSRRGASRS YCMGENSRQS AFISHRPPLP SQSTCLQFKD PSRSTGNVQL ATQLTREEMQ  900
KEISKLRNEN QRILKLFVSM RADNSFQQFI KKNKVIQQEN LALPCQIKAI RGDNAKLSVV  960
SESLP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430508.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024038030.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024038031.1	0.0	protein FAR1-RELATED SEQUENCE 7
TrEMBL	V4S8C7	0.0	V4S8C7_9ROSI; Uncharacterized protein
STRING	XP_006430508.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19171	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-98	FAR1-related sequence 5