PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_29127_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 158aa MW: 17882.3 Da PI: 10.1859 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.1e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l +v+++G+++W++I++ ++ gR++k+c++rw + Neem_29127_f_1 12 KGPWSPEEDEALQLLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ Neem_29127_f_1 66 AFTPEEDEMIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.466 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-33 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-17 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-19 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-15 | 14 | 56 | No hit | No description |
SMART | SM00717 | 1.8E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.605 | 64 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.90E-12 | 66 | 109 | No hit | No description |
Pfam | PF00249 | 5.6E-16 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 158 aa Download sequence Send to blast |
MAFNRKEVDR IKGPWSPEED EALQLLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRAFTPE EDEMIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSLMTGN 120 GNFGNCPSLM TGNATTVEKI RECGIRSAGD YRALYEPG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-42 | 11 | 113 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-42 | 11 | 113 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-42 | 11 | 113 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275856.1 | 4e-85 | putative R2R3-Myb transcription factor | ||||
Refseq | XP_006425988.1 | 4e-85 | transcription factor MYB44 | ||||
Swissprot | O23160 | 3e-69 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A2H5N029 | 3e-84 | A0A2H5N029_CITUN; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2H5PDV9 | 6e-84 | A0A2H5PDV9_CITUN; Uncharacterized protein | ||||
TrEMBL | A5HLW5 | 9e-84 | A5HLW5_CITSI; Putative R2R3-Myb transcription factor | ||||
TrEMBL | A5HLW6 | 8e-84 | A5HLW6_CITSI; Putative R2R3-Myb transcription factor | ||||
TrEMBL | A5HLW7 | 9e-84 | A5HLW7_CITSI; Putative R2R3-Myb transcription factor | ||||
TrEMBL | A5HLW8 | 9e-84 | A5HLW8_CITSI; Putative R2R3-Myb transcription factor | ||||
TrEMBL | V4RWL5 | 9e-84 | V4RWL5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006466545.1 | 1e-84 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23290.1 | 8e-72 | myb domain protein 70 |
Publications ? help Back to Top | |||
---|---|---|---|
|