PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_29055_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 402aa MW: 44639.1 Da PI: 8.9495 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Neem_29055_f_1 27 KYVRYTAEQVEALERVYLECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 85 56789****************************************************97 PP | |||||||
2 | bZIP_1 | 19.8 | 1.8e-06 | 79 | 121 | 18 | 60 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v++l Neem_29055_f_1 79 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLV 121 9***************************************985 PP | |||||||
3 | START | 158.7 | 4.7e-50 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v ++a +e+l+d++ W +++++ e+ g g+++l Neem_29055_f_1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPA-KIAEILKDRPSWFRDCRSLEVFTMFPAGnaGTIELL 258 7899******************************************************.7777777777*****************99******* PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++ +a+++l+p Rdf+++Ry+ +l g++v++++S++ p+ +++vR+e+lpSg+li+p+++g+s + +v+h +l++++++++lr+l+ Neem_29055_f_1 259 YTQAYAPTTLAPaRDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNpaaAAQFVRGEMLPSGYLIRPCEGGGSIIRIVDHLNLEAWSVPEVLRPLY 353 **************************************98888888899********************************************** PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+ + +++++ a+l++ + Neem_29055_f_1 354 ESSKVVAQRMTIAALRYIR 372 **************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 7 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-15 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-16 | 25 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.87E-15 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 4.4E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 2.31E-5 | 79 | 118 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-4 | 83 | 132 | No hit | No description |
PROSITE profile | PS50848 | 27.544 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 5.11E-69 | 159 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 7.3E-20 | 164 | 350 | IPR023393 | START-like domain |
SMART | SM00234 | 4.8E-40 | 164 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-33 | 164 | 376 | No hit | No description |
Pfam | PF01852 | 1.3E-47 | 165 | 372 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MAMVMQQQQQ RESSSGSINK HQLDSGKYVR YTAEQVEALE RVYLECPKPS SLRRQQLIRE 60 CPILANIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL 120 VCENGYMRQQ LHTAPATTDA SCDSVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PAKIAEILKD RPSWFRDCRS 240 LEVFTMFPAG NAGTIELLYT QAYAPTTLAP ARDFWTLRYT TTLDNGSLVV CERSLSGSGA 300 GPNPAAAAQF VRGEMLPSGY LIRPCEGGGS IIRIVDHLNL EAWSVPEVLR PLYESSKVVA 360 QRMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM465908 | 2e-44 | AM465908.2 Vitis vinifera contig VV78X255096.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488084.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A2H5NDV0 | 0.0 | A0A2H5NDV0_CITUN; Uncharacterized protein | ||||
STRING | XP_006488084.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |