PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2892_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92283.5 Da    PI: 6.736
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2892_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-181977357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Neem_2892_f_3 19 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                   6789*****************************************************97 PP
2START514.2e-17168264297
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l++
  Neem_2892_f_3 168 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIELIY 262
                    68999*****************************************************.8888888888******************999999988 PP

                    EX CS
          START  96 ae 97 
                    ++
  Neem_2892_f_3 263 MQ 264
                    76 PP
3START71.42.4e-23265347125204
                    EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
          START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                    ++++S++s +  p     ss+vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s+ + ++k+++a+l++ +
  Neem_2892_f_3 265 VCERSLTSSTGGPAgppASSFVRAEVLPSGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAALRHIR 347
                    789999998888877779*************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6941478IPR001356Homeobox domain
SMARTSM003894.4E-151682IPR001356Homeobox domain
SuperFamilySSF466892.35E-161981IPR009057Homeodomain-like
CDDcd000862.97E-161979No hitNo description
PfamPF000464.3E-161977IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-182177IPR009057Homeodomain-like
CDDcd146862.37E-671110No hitNo description
SMARTSM002346.9E-26167349IPR002913START domain
SuperFamilySSF559613.02E-25168351No hitNo description
PfamPF018525.4E-14168264IPR002913START domain
PfamPF018521.7E-20265347IPR002913START domain
Gene3DG3DSA:3.30.530.208.9E-7273344IPR023393START-like domain
PROSITE profilePS5084812.744280358IPR002913START domain
PfamPF086708.2E-46709843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MALAIHNKEL ANKQMDSSKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LSAMNKLLME ENDRLQKQVS HLVYENGYMR  120
QQLHSASATT TDNSCESVVM SGQHQQQQNP TPQHPQRDAN NPAGLLAIAE ETLAEFLSKA  180
TGTAVDWVQM IGMKPGPDSI GIVAVSRNCS GVAARACGLV SLDPTKVAEI LKDRPSWFRD  240
CRCLDVLSVI PTGNGGTIEL IYMQVCERSL TSSTGGPAGP PASSFVRAEV LPSGFLIRPC  300
EGGGSIIHIV DHVDLDAWSV PEVLRPLYES SKILAQKMTM AALRHIRQIS QETSGEIQYG  360
GGRQPAVLRT FSQRLSRGFN DAINGFADDG WSLMNSDGVE DVTIAINSSA NKFLGSQYNT  420
SMFPTFGGVL CAKASMLLQN VPPALLVRFL REHRSEWADY GVDAYSAACL KASPYAVPCT  480
RPGGFPSSQV ILPLAQTVEH EEFLEVVRLE GHAFSPEDVA LARDMYLLQL CSGVDESAVG  540
ACAQLVFAPI DESFADDAPL LPSGFRVIPL DSKTVPDGPA ATRTLDLASA LEIGSGGARP  600
AGETELSNYT SRSVLTIAFQ FTFENHLRDN VATMARQYVR SVVGSVQRVA MAISPSRLSP  660
HAGPKSLPGS PEALTLARWI SRSYRCKIEA AFSATIARIL MIACVVCLRI HTGGELLRAD  720
SPTGDALLKQ LWHHSDAIMC CSVKTNASPV FTFANQAGLD MLETTLVALQ DIMLDKILDE  780
AGRKTLCSEF AKIMQQGFAY LPGGICVSSM GRPVSYEQAV AWKVLNDEDA NHCLAFMFIN  840
WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196191e-49AY919619.1 Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024047817.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2H5N2040.0A0A2H5N204_CITUN; Uncharacterized protein
STRINGXP_006468302.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]