PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28790_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 262aa    MW: 28890 Da    PI: 8.7815
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28790_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-392180261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s
  Neem_28790_f_1 21 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 80
                    6899******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-282079IPR003851Zinc finger, Dof-type
PfamPF027011.9E-332379IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1992579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEEVVSNTCA TRPMLERKAR PQEQLNCPRC NSTNTKFCYY NNYSLTQPRY FCKTCRRYWT  60
EGGSLRNVPV GGGSRKNKRS ISSSASTHKL PDLNPPNLSQ FASQNPKIHK GQDLNLAFQV  120
MHDNHDISQY VEVPKAENNN NNQQNSSLSS SYSSSPVSAL DLLRTGIASR GLDSFIPTPM  180
PDSHTLFSSG FPLQDIKPTL SFSIDGLGDR FGNANGVQEN GGRLFFPFGE LKQISSSTEV  240
DQNKGQGSST GYWNGMLGGG SW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051499.21e-141PREDICTED: dof zinc finger protein DOF2.5 isoform X3
RefseqXP_017980017.11e-141PREDICTED: dof zinc finger protein DOF2.5 isoform X3
SwissprotQ433853e-68DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A061DUF01e-139A0A061DUF0_THECC; F-box family protein, putative isoform 4
STRINGEOX956551e-139(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-76Dof family protein