PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28680_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 388aa MW: 43533.7 Da PI: 8.587 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 1.9e-23 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ Neem_28680_f_1 123 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 214 99*****************************9445444.38************************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ Neem_28680_f_1 215 SQLLLGIRRA 224 778**99997 PP | |||||||
2 | Auxin_resp | 126.3 | 2e-41 | 249 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++gvsd+dpvrW+nS+Wr+L+ Neem_28680_f_1 249 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAVYTQVSLGMRFRMMFETEESGVRRYMGTITGVSDIDPVRWKNSHWRNLQ 331 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-46 | 113 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-43 | 115 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.09E-21 | 122 | 223 | No hit | No description |
Pfam | PF02362 | 1.5E-21 | 123 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.294 | 123 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-23 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-36 | 249 | 331 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MKAQSNGFLP NSAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 NDFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP YEKEALLASD MGLKQSRQPT 120 EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QELVARDLHD TTWTFRHIYR 180 GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RDEKSQLLLG IRRANRQQPA LSSSVISSDS 240 MHIGILAAAA HAAANNSPFT IFYNPRASPS EFVIPLAKYN KAVYTQVSLG MRFRMMFETE 300 ESGVRRYMGT ITGVSDIDPV RWKNSHWRNL QVGWDESTAG ERPSRVSIWE IEPVVTPFYI 360 CPPPFFRPKF PKQPGMPGIF FSPNNEPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-179 | 9 | 352 | 39 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB671225 | 1e-129 | AB671225.1 Melia azedarach DNA, microsatellite: MA-TC20_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010273878.1 | 0.0 | PREDICTED: auxin response factor 7-like | ||||
Refseq | XP_015867478.1 | 0.0 | auxin response factor 19-like isoform X1 | ||||
Refseq | XP_028782730.1 | 0.0 | auxin response factor 19-like | ||||
Refseq | XP_028797210.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 19-like | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A0B0MNI0 | 0.0 | A0A0B0MNI0_GOSAR; Auxin response factor | ||||
TrEMBL | A0A1U8BCB5 | 0.0 | A0A1U8BCB5_NELNU; Auxin response factor | ||||
STRING | XP_010273878.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |