PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28678_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 417aa    MW: 46693 Da    PI: 4.9852
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28678_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.32.1e-21121175128
             NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                     + F  tdeelvv  L++ ++g++l+  +vi++v+ +++ P++Lp      e+ wyf s++         +nr++++g+Wka+gk  +++s ++  
  Neem_28678_f_1  12 IDFASTDEELVVS-LERIIRGSRLPS-NVIDDVNPFSFMPKNLP------EQVWYFVSSK---------ENRSAQDGRWKAKGKACQIFS-DSDI 88 
                     57999******66.***********9.99**************9......4678887765.........5688899**************.999* PP

             NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                     +g k+tL f++g+ap+  ktdW+m+e+++
  Neem_28678_f_1  89 TGWKTTLEFFEGQAPHEYKTDWIMQEFTI 117
                     ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.3018140IPR003441NAC domain
SuperFamilySSF1019416.54E-288140IPR003441NAC domain
PfamPF023652.0E-1111116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MCPPTASTPI DIDFASTDEE LVVSLERIIR GSRLPSNVID DVNPFSFMPK NLPEQVWYFV  60
SSKENRSAQD GRWKAKGKAC QIFSDSDITG WKTTLEFFEG QAPHEYKTDW IMQEFTITQK  120
KLCENRKAED SRSLCRVFLS GTQSLNDDKQ PNLSGPDVIS ETLSHSTQIS FAKAGDDERR  180
GSSSKPQLGS SDEHNDEGSH PLKVLVRHRD DDNVLVNDDN VTRALAVMDR PTNHPEDNLP  240
EIDYFSDGDF LELRDLEYPA SPSSSSDNSS CMTTSSDEYF DSDALLQELE PKKGNGVAPE  300
NAGYKYSFST AHRPDEVVML PGSIIRVERS KPETEEIVKT KCSMPGSYMV NSKLDSKALK  360
QAIQCQKADY GVEGASSNSH NLRPLSPGHF ELQNGEKKAA VGRMKKLKRK YFCFMPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-14713814166Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434933.11e-164NAC transcription factor 29 isoform X2
TrEMBLA0A2H5NTN11e-163A0A2H5NTN1_CITUN; Uncharacterized protein
STRINGXP_006434934.11e-159(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.15e-20NAC domain containing protein 28