PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28659_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 153aa MW: 17350.3 Da PI: 7.2727 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.5e-08 | 103 | 125 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f++rtG Ck+G CkF+H+ Neem_28659_f_3 103 EDCSFYLRTGCCKFGFYCKFNHP 125 89********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.07 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.32E-5 | 103 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 103 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MCGRKIQREL GQKSPPGPRS FGKMVDVWEK NTTGTWAEES SWSPKRDKTQ FSAQEQEQAL 60 VDGFRKNVAL NEAENMCKES DNLDGNGESN GTNHEYPLRP YAEDCSFYLR TGCCKFGFYC 120 KFNHPVRRGF QGVKEMEGGG IVEHQQGQIQ CKV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447207.2 | 2e-41 | zinc finger CCCH domain-containing protein 43 | ||||
Refseq | XP_006469940.1 | 2e-41 | zinc finger CCCH domain-containing protein 43-like | ||||
Refseq | XP_024045834.1 | 2e-41 | zinc finger CCCH domain-containing protein 43 | ||||
Refseq | XP_024045835.1 | 2e-41 | zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A067DSB2 | 5e-40 | A0A067DSB2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QKS6 | 1e-39 | A0A2H5QKS6_CITUN; Uncharacterized protein | ||||
TrEMBL | A0A2H5QKV5 | 5e-40 | A0A2H5QKV5_CITUN; Uncharacterized protein | ||||
STRING | XP_006469940.1 | 7e-41 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22971 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 3e-15 | C3H family protein |