PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_28659_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 218aa MW: 24450.5 Da PI: 7.6869 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.4e-09 | 17 | 38 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++ G CkyG++C+++H+ Neem_28659_f_2 17 ECKYHLSAGGCKYGATCRYNHS 38 7********************8 PP | |||||||
2 | zf-CCCH | 36 | 1.2e-11 | 70 | 92 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+f++rtG C yG +C+++H+ Neem_28659_f_2 70 KDCPFYMRTGSCAYGVNCRYHHP 92 58********************9 PP | |||||||
3 | zf-CCCH | 33.2 | 9e-11 | 181 | 207 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG C y + CkF+H++ Neem_28659_f_2 181 PGEPPCDYFMKTGKCEYRSACKFHHPK 207 5899*********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0071 | 12 | 39 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.896 | 12 | 40 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 16 | 41 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-7 | 17 | 38 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 18 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-6 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 69 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 70 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 72 | 91 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3E-5 | 180 | 207 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.033 | 180 | 208 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-7 | 182 | 207 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 184 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 185 | 206 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MKESKSESLL EKTGVIECKY HLSAGGCKYG ATCRYNHSTE KEKTLRYIKK SEKAPLELNF 60 LGLPIRVLEK DCPFYMRTGS CAYGVNCRYH HPDPVAAGES DHFNANPTEV FLAGHSSGNN 120 DRLQFKEASE PDVESWSSNT GSIFPPARTE MPLPSPAIND KMKTADTSTY LQQFKEFPER 180 PGEPPCDYFM KTGKCEYRSA CKFHHPKSRA SESSVCAQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447207.2 | 1e-79 | zinc finger CCCH domain-containing protein 43 | ||||
Refseq | XP_006469940.1 | 1e-79 | zinc finger CCCH domain-containing protein 43-like | ||||
Refseq | XP_024045834.1 | 1e-79 | zinc finger CCCH domain-containing protein 43 | ||||
Refseq | XP_024045835.1 | 1e-79 | zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | V4U3F8 | 3e-80 | V4U3F8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006447207.1 | 5e-81 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18083 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48440.1 | 6e-43 | C3H family protein |