PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28654_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | STAT | ||||||||
Protein Properties | Length: 587aa MW: 66515.9 Da PI: 7.3593 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 197.4 | 1.4e-61 | 24 | 141 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldvvllna+gqpv+kd+ev asLlyad+g +vek++d eapLL+sydG+ef+s+drp+k+l+GrasfklkisqLsskcdnrLfri+fe++kl + Neem_28654_f_1 24 LDVVLLNAFGQPVNKDMEVTASLLYADTGGLVEKTNDGEAPLLTSYDGIEFASYDRPSKILHGRASFKLKISQLSSKCDNRLFRIRFEVLKLAGF 118 8********************************************************************************************** PP STAT 96 pfleavskpirCisrsrntrsss 118 pflea+s+ irCisr+r++r+ Neem_28654_f_1 119 PFLEALSRAIRCISRNRTVRTCP 141 ******************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.505.10 | 5.9E-6 | 403 | 458 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 1.24E-8 | 405 | 478 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.351 | 408 | 468 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MAFGALLAAR LDIRKASCRR IFSLDVVLLN AFGQPVNKDM EVTASLLYAD TGGLVEKTND 60 GEAPLLTSYD GIEFASYDRP SKILHGRASF KLKISQLSSK CDNRLFRIRF EVLKLAGFPF 120 LEALSRAIRC ISRNRTVRTC PIICKKTPAA IHPLDGSQSC GFDDGSVEIQ HNTVREAKPS 180 PSSKRVRLEQ EKISAMEQPE GECDSHPWTA NRAENAFGKA SDGRRENLEE VEISPSDSES 240 TGARNSSFKS NENSVSDLTI FKYCLGSLTE RSLLLKEIAT SFSDEEILEF AHQVSIYSGC 300 SHHRYQIIIA KRLIEEGRNA WNMISQNNHP VHWDSAVFEI EEQFMKICCC SIRSLTQQDF 360 DLLRRIAGCQ DYLAQENFEK LWCWLYPVAF TLSRDWINTT WKSTSPKWIE GFITKEEAER 420 SLHGPRGLQE PGTFVLRFPT SRSWPHPDAG SLIVTYVGSD YTLHHRQVSV DYIYRDMEVK 480 PLQDLLMLEP ELSRLGRQDI SQLQLFLFSF TSLILPISGT KSNRPTLIPT EKKGRVEGHG 540 EVAFAFKFGS RESSCLTRLH AHLLILLASL IPKLLHQFQK QVAEILW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045096.1 | 0.0 | SH2 domain-containing protein B isoform X3 | ||||
Swissprot | Q56XZ1 | 1e-175 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | V4U062 | 0.0 | V4U062_9ROSI; Uncharacterized protein | ||||
STRING | XP_006442321.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 1e-177 | SH2 domain protein B |
Publications ? help Back to Top | |||
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