PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28615_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 337aa MW: 37132.6 Da PI: 6.3702

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28615_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.4e-33	265	319	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+ Neem_28615_f_1 265 KPRMRWTPELHECFVEAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRI 319 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.087	262	322	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-32	263	320	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-18	263	319	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-25	265	320	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-9	267	318	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNHHSIISVT QSESNKGVSQ SCCTALSSIH NFCVERVEHC PSTGECSSPH PSPFIQKESL 60 NSPNHMQVST VLPQKNCLIA RPDSPMSLGS HLQHSRGTFS RSSCFCTSLY LSSSSSSETH 120 RQLGNLPFLP HPPSYNQSVS AVDSTKSPLL FSEDVGNPYE EEHPESLMKD FLNLPGDASN 180 GSFHGVTCMG DGFNEQLELQ FLSDELDIAI NDHGENPRLD EIYEAPQSSL KPILGLTCNQ 240 NYVPSAPPVD AVSSHPSPGP ASSHKPRMRW TPELHECFVE AVNKLDGAEK ATPKGVLKLM 300 NVEGLTIYHV KSHLQKYRIA KYMPEKKEGN EHIMKEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-29	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-29	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-29	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-29	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-29	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-29	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-29	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-29	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488616.1	1e-179	myb family transcription factor PHL6
Refseq	XP_006488617.1	1e-179	myb family transcription factor PHL6
Swissprot	Q949U2	1e-102	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A067FUH4	1e-180	A0A067FUH4_CITSI; Uncharacterized protein
STRING	XP_006488616.1	1e-179	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-87	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]