PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28323_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 307aa MW: 35372.5 Da PI: 6.3965

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28323_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.5	5.3e-16	73	157	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+ +L++a ++ + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k ++ + t ++ss+++yf++++ Neem_28323_f_1 73 WNEHETFVLLDAWGDRFLQRGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKLRMAE-TGDTSSKWVYFKKMD 157 ***********************************762678**********************9.688999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-5	36	44	IPR009057	Homeodomain-like
Pfam	PF13837	7.6E-22	72	159	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-5	98	140	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDDTDDDARY PPNPYAMNHQ QGYDDVNLER HPKKRKLKSL VSSYEFAPRV PTPAVAPPAP 60 RPSSGGRNSL TDWNEHETFV LLDAWGDRFL QRGRKSLRSE EWQEVAEKVS EVSKIERTDT 120 QCRNRLDTLK KKYKKEKLRM AETGDTSSKW VYFKKMDMLM SSPPQQGGLS CGLDSGEYVF 180 MNPRAYLNRA NGVDEMRDSP ANSVSIGGEE DDSDGLPPKK RKIGRESDER SSFRLLADSI 240 HKFSEIYEKI ENSKRQQMLE LERMRMDFHR DLEMQKRQIM ERAQAEIAKI RQGLDDENDV 300 SAENASG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006465549.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A067EJ31	0.0	A0A067EJ31_CITSI; Uncharacterized protein
STRING	XP_006465549.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15605	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-74	Trihelix family protein