PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28291_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 45585.5 Da PI: 8.7076 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.4e-11 | 24 | 50 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G +CkF+H++ Neem_28291_f_1 24 PGEPDCPYFLKTKKCKFGLKCKFNHPK 50 5789*********************96 PP | |||||||
2 | zf-CCCH | 37.1 | 5.4e-12 | 73 | 97 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++G+Ck+G++CkF+H++ Neem_28291_f_1 73 EPPCAFYLKNGICKFGATCKFHHPK 97 79*********************96 PP | |||||||
3 | zf-CCCH | 38.7 | 1.6e-12 | 151 | 176 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Neem_28291_f_1 151 PGEVDCPFYLKTGSCKYGSTCRYNHP 176 57899********************9 PP | |||||||
4 | zf-CCCH | 41.6 | 2.1e-13 | 239 | 260 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG CkyG+rCkF+H+ Neem_28291_f_1 239 ECDYYMKTGVCKYGERCKFHHP 260 7********************9 PP | |||||||
5 | zf-CCCH | 35.5 | 1.7e-11 | 360 | 380 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++tG CkyG++CkF H+ Neem_28291_f_1 360 CPYYMKTGSCKYGSTCKFDHP 380 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.737 | 23 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 23 | 50 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-9 | 25 | 50 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 28 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 29 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.572 | 70 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 73 | 97 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 73 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 75 | 96 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-7 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-5 | 154 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 156 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 234 | 262 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-7 | 234 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-7 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 239 | 260 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-6 | 240 | 260 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 357 | 381 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 358 | 381 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 359 | 382 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-9 | 360 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-5 | 360 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MLYRPILILL RVPLIASEWL PERPGEPDCP YFLKTKKCKF GLKCKFNHPK DKLIALSDSG 60 NADVSTLPER PSEPPCAFYL KNGICKFGAT CKFHHPKDIQ ISSGGQENGS SKQNELLFKT 120 EETTGLLNSV MPHVPYIPAM LHNSKGLPIR PGEVDCPFYL KTGSCKYGST CRYNHPDRNA 180 INPPASAIGH HFITSHAASL SLGIVNPAAS MYQTIDPRLA QSALGVSPTF YPQRPGQMEC 240 DYYMKTGVCK YGERCKFHHP LDLSTAKQAS QETVKLTLAG LPRRELCMNS FYVHLSYFHK 300 EVKNSTQMNS HLGIFRFRHL VSRLYVIYIC VLIYMGGTWE WKHRRYFLSL TLHVEGALHC 360 PYYMKTGSCK YGSTCKFDHP TPGEVLAKTG SQGTSTEGDE KEAETD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006493723.1 | 1e-160 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Refseq | XP_024047902.1 | 1e-160 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Swissprot | Q941Q3 | 1e-107 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A067F2C4 | 1e-156 | A0A067F2C4_CITSI; Uncharacterized protein | ||||
STRING | XP_006493722.1 | 1e-157 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9761 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-95 | floral homeotic protein (HUA1) |